Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00872 ATGTTCGACCCTGTTGTTATTGCTTCCGATCACACATTTGAGCATGTTGTTGTTCAAGTTTGTAGAGATTTGAACTTCTCGCCCAACCTCGAAGATGGTTCTCGACTTGATTTCTCTACCGTCATTTCCAATTTAGCCATCAGAAGTACCATCTCTAGTTGGTGTAAAAACTCCAGTACGAAACTCCCTCACGCGCCTGAATATAGTTTTGTCGTGAGTGTTGTACGCGAATCAATGGTGTCCCAGAAGGACTTGCCAAATTTAAGGGTTTCGAAAAGGGAATTGCTGAGGGCAGTCGTGTGCAACCCGTCGGTGATACTCTCCCACGCCGCCACCGAATTGTTGGGTCCTCGGGTTAACCACTTCGATTCGGGTTCCTCGGAGGAATCTGAAATCGTCATGCCAAACCCCAGCACGCCTCTGCATCTAGCCACTCGTCTAGCCTATTACTCTTCATCGTCGTCTTCTTCCGTAACCGTCGAATCGGAATTTCAAAATCCTAATGGCCCAATTTCTAAAGAAGAGGACAAATTAGTCTCGAAGATGAAAAGCAGTGAAGAGCCGAGACTGCGGGTGGCTTACTGCAGAGTAGATGAGTAG 600 0.4717 MFDPVVIASDHTFEHVVVQVCRDLNFSPNLEDGSRLDFSTVISNLAIRSTISSWCKNSSTKLPHAPEYSFVVSVVRESMVSQKDLPNLRVSKRELLRAVVCNPSVILSHAATELLGPRVNHFDSGSSEESEIVMPNPSTPLHLATRLAYYSSSSSSSVTVESEFQNPNGPISKEEDKLVSKMKSSEEPRLRVAYCRVDE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00872 199 MobiDBLite consensus disorder prediction 159 184 - -
Accr1g00872 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 61 IPR013083 -
Accr1g00872 199 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Accr1g00872 199 SUPERFAMILY RING/U-box 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00872 Accr-Chr1 19233089 19233688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00872 1 186 U-box Gene Family AT5G65200 43.814 2.03e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00872 - - aip:107643932 186.037