Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00853 ATGGATTCTGCTTCCTTGTATCAGTCCCCCCCCCCCCCCCCGGGGGGCGGCCCTTTTTTTGCAATGGGAAGGAAAAAGTCAGAGGAAGCTGGCCCTGCCACAAAGGCTAAGAAGGAAAAGTTCTCCGTCTCTGCCTTGCTTGCCAGTATGGATGAAAAACCTGATAAACCCAAAAAAGGATCTTCTTCATCCAGTAAGCCCAAGGCAAAATCTGCTCCAAAAGTTTCTGCATATACTGACGGTATTGATCTTCCTCCCTCTGATGATGAAGATGAAGATATCATGAAAGAGGAGCAAGAACAAAATAGTGTGGCTAAGCGGTCCACTCAGCAGCAAAAGCCTGAGTTAAAGCCTCTTGATGTGGCTATCAGTGACAAAGAGTTAAAAAAGCGGGAAAGGAAGGATATTCTTGCTGCCCATGCTGCAGAGTTGGCTAAGCAGGAAGCACTCAAGGATGACCGTGATGCTTTTACTGTGGTCATTGGAAGCCGGACTTCAGTGCTTGATGGAGAAAATGATGCCGATGCCAATGTGAAAGATGTGACCATAGAAAACTTTTCTGTGTCAGCTCGGGGTAAAGAACTCCTTAAGAATGCATCAGTAAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCCAATGGAAAGGGAAAGTCCACATTGTTGAAGCTCCTTGCCTGGAGGAAGATACCAGTGCCAAAGAATATTGATGTGCTTCTGGTTGAACAGGAGGTAGTTGGTGATGATAAAACAGCACTTGAAGCTGTTGTTTCAGCTAATAAAGAACTTGTTAAAACCCGACAAGAAGTGGCTCTTCTTCAAAATGCAAGTTCTGCTGAAGAAAGTGTAGACAAGGATGATGGACTTGAAGATGATGCAGGAGAGAAGCTTGCTGAGCTGTATGACAAGTTACAGCTGATGGGATCTGATGCAGCTGAAGCTCAAGCATCAAAGATTTTAGCAGGATTAGGTTTTACCAAGGATATGCAGGGCCGTGCTACAAAGTCATTTAGTGGGGGTTGGAGGATGAGAATTTCTTTAGCCAGAGCACTTTTTGTTCAACCAACTCTATTATTGCTTGATGAACCAACAAATCATCTTGATCTGAGAGCTGTTCTCTGGTTGGAGGAGTACTTGTGCCGTTGGAAGAAGACTTTGGTGGTCGTTTCACATGATAGGGATTTCCTAAATACAGTTTGCAATGAAATTATTCATCTGCATGATTTGAAACTTCATATCTACCGTGGAAATTTTGATGATTTTGAAAGTGGTTATGAGCAGCGTCGCAAGGAGATGAATAAGAAGTTTGAGATTTATGATAAGCAGATGAAAGCAGCCAAAAGAAGCGGAAATCGGGTTCAGCAGGAAAAGGTGAAGGATCGGGCCAAGTTTACGGCTTTGAAGGAAGCAGCAAAAAGCAAGGGCAAGAGCAAGGTTGATGAGGATGAAGCCCCAGCAGAGGTTCCACAAAAGTGGAGGGATTACAGTGTTGAGTTTCACTTCCCTCAACCCACTGAACTAACACCTCCTCTGCTGCAGCTTATTGAAGTGAGCTTCAGCTATCCGAATCGACAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTAGCCATTGTAGGGCCTAACGGAGCTGGGAAATCAACGCTGCTGAATCTTCTTGCTGGTGACTTGACTCCAACTGAGGGTGAAGTTCGAAGAAGTCAGAAATTGAGGATTGGAAGATATTCCCAGCACTTTGTGGACCTTCTAACCATGGATGAAACGCCTGTTCAGTATCTTCTTCGTCTCCATCCAGATCAGGAAGGACTCAGTAAGCAGGAGGCTGTTAGAGCAAAGCTCGGTAAGTTTGGATTACCTAGCCATAATCATCTCACCCCTATCGTCAAGCTATCAGGAGGGCAGAAAGCTCGGGTGGTGTTCACATCAATATCCATGTCAAAGCCCCACATTTTGCTATTGGATGAACCAACTAATCATCTGGATATGCAAAGTATTGATGCATTAGCTGATTCATTGGATGAGTTCACTGGTGGAGTTGTTCTTGTTAGTCATGATTCTAGATTGATATCACGCGCATGCGAGGATGAAGAGAGAAGTCAAATATGGGTAGTTGAGGATGGTACCGTCAAATTCTTTGATGGAACTTTTGAGGATTACAAGTACGAGCTACTGAGAGAAATTAAAGCTGAAGTTGATGATTGA 2223 0.4422 MDSASLYQSPPPPPGGGPFFAMGRKKSEEAGPATKAKKEKFSVSALLASMDEKPDKPKKGSSSSSKPKAKSAPKVSAYTDGIDLPPSDDEDEDIMKEEQEQNSVAKRSTQQQKPELKPLDVAISDKELKKRERKDILAAHAAELAKQEALKDDRDAFTVVIGSRTSVLDGENDADANVKDVTIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANKELVKTRQEVALLQNASSAEESVDKDDGLEDDAGEKLAELYDKLQLMGSDAAEAQASKILAGLGFTKDMQGRATKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCNEIIHLHDLKLHIYRGNFDDFESGYEQRRKEMNKKFEIYDKQMKAAKRSGNRVQQEKVKDRAKFTALKEAAKSKGKSKVDEDEAPAEVPQKWRDYSVEFHFPQPTELTPPLLQLIEVSFSYPNRQDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLTPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADSLDEFTGGVVLVSHDSRLISRACEDEERSQIWVVEDGTVKFFDGTFEDYKYELLREIKAEVDD 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00853 740 SMART AAA_5 205 410 IPR003593 GO:0016887
Accr1g00853 740 SMART AAA_5 539 715 IPR003593 GO:0016887
Accr1g00853 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 181 441 IPR003439 GO:0005524
Accr1g00853 740 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 154 733 - -
Accr1g00853 740 CDD ABCF_EF-3 181 411 - -
Accr1g00853 740 FunFam ABC transporter F family member 4 478 740 - -
Accr1g00853 740 CDD ABCF_EF-3 513 715 - -
Accr1g00853 740 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524|GO:0016887
Accr1g00853 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 513 738 IPR003439 GO:0005524
Accr1g00853 740 Pfam ABC transporter 530 665 IPR003439 GO:0005524
Accr1g00853 740 Coils Coil 430 450 - -
Accr1g00853 740 Pfam ABC transporter 196 366 IPR003439 GO:0005524
Accr1g00853 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 727 IPR027417 -
Accr1g00853 740 Coils Coil 257 277 - -
Accr1g00853 740 FunFam ABC transporter F family member 4 179 462 - -
Accr1g00853 740 Gene3D - 178 464 IPR027417 -
Accr1g00853 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 429 IPR027417 -
Accr1g00853 740 MobiDBLite consensus disorder prediction 1 121 - -
Accr1g00853 740 Gene3D - 476 739 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00853 Accr-Chr1 18366595 18368817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00853 513 716 Calmodulin-binding Proteins AT2G36910 28.251 4.67e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00853 K06184 - qsa:O6P43_012151 1197.19