Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00852 ATGAACCAACAGGGTTTTCATCTTCTGGTTCTGTATCTCATATTCTTCTTCATCAGAATATTTTCCTGTGAGGCACAGACTTCCTCAAATACAAATAGTACTGCCCCTTCGTCTCCACAAGATGTTGTCACAAGTTTCCGACCAAGTCTTGCTGTTGTAATGGCGATTCTGACTTTCTTGTTCTTTGTAACTTTCTGTCTCCTCATCTATGTCAAGTGTTGCAGTTTCAGGGGAGATTCAACAGTTTATGGAAACCCAGAAAGTCAACCTTGGCTTTTCAGAACAAGGTCAACGAGATTCTCAGGAATCGACAAGGCTGTCGTAGAATCACTCCCCTTCTTCAGATTCTCTTCCTTAAAAGGATCAAAAGAAGGCCTTGAATGCGCTGTTTGCTTGTCGAAGTTCGAAGATGTCGAGATTCTCAGGCTGCTTCCAAAATGTAAACATGCTTTTCACATTAATTGTATTGATCATTGGCTTGAGGAGCATTCTAGTTGTCCTCTCTGTAGGCACAAGGTTGATCCTGAAGATCAAACCATTTTCACATATTCTAATAGCTTGAGGCTGCTCATCAATGGAGGTGCCGGCGCAGAATCCGGAGGAGAAGAATCATCCAACTTAGGGCTTTTTGTTCAGAGAGAGGAAGAAGATCAACAAAATAATGGGTCATCATCAAGATTCAATTTTGGGAGCAGCTTGAGGAGAATCATTAACATAAAGGGTTCTTCTTCAAAAGAAGAAGATGAATTGCCTATTCAAAAACCAGCTCATCCTGATGGTCACAGAAAAAAGGTCTATCACAAGGTCAAACACAGTATTTCTGTATCAGATTTTGTGTTGAAGAATCGATGGAGCAATGTTAGTTCCTCGGACCTCATGTTCTTGAACTCAGAGATGATTGGTTCTGCTTCAAGTTTAAGATTCAACAATACTAATGGTGATCAGAGTCAGGTTCCAACTGGAGAAGCAGGAAATGATGATGAGCAAGTTATTGTGATGAATCTGAAGGAGGAGATGGAGAGGAAGGTTTTATTTGAGAACAAAGTGAGTGGAGTACTAAAGAAGAACAATCTCAATTCAGATTCAGATTCTGCAGAACATAATAATTTGGGTGACGGTACATCAAAGTATATTGTGAATTCAGATAAGGAAAGATCAGTATCAGACATAACTGCTGTGTCTCGATTTGGAGGTTTGGGCATGAGAAATGGTAGCCTTAATAATAAGAATAAAGGTTCTTCATCTTTGGTTGATGATCAGAAGAATGTGAAAGAGGAAAGAGTGAGACAGATTTGGCTTCCAATTGCCAAAAGAACAGCTCAACGGTTTGCGAACAGAGAAAAAAGGTTTCAGCAATCTCTGAATAATGTATAG 1374 0.3974 MNQQGFHLLVLYLIFFFIRIFSCEAQTSSNTNSTAPSSPQDVVTSFRPSLAVVMAILTFLFFVTFCLLIYVKCCSFRGDSTVYGNPESQPWLFRTRSTRFSGIDKAVVESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHINCIDHWLEEHSSCPLCRHKVDPEDQTIFTYSNSLRLLINGGAGAESGGEESSNLGLFVQREEEDQQNNGSSSRFNFGSSLRRIINIKGSSSKEEDELPIQKPAHPDGHRKKVYHKVKHSISVSDFVLKNRWSNVSSSDLMFLNSEMIGSASSLRFNNTNGDQSQVPTGEAGNDDEQVIVMNLKEEMERKVLFENKVSGVLKKNNLNSDSDSAEHNNLGDGTSKYIVNSDKERSVSDITAVSRFGGLGMRNGSLNNKNKGSSSLVDDQKNVKEERVRQIWLPIAKRTAQRFANREKRFQQSLNNV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00852 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 448 - -
Accr1g00852 457 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Accr1g00852 457 SUPERFAMILY RING/U-box 108 176 - -
Accr1g00852 457 CDD RING-H2_EL5-like 127 170 - -
Accr1g00852 457 SMART ring_2 128 169 IPR001841 -
Accr1g00852 457 FunFam RING-H2 finger protein ATL43 103 177 - -
Accr1g00852 457 Pfam Ring finger domain 127 170 IPR001841 -
Accr1g00852 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 179 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00852 Accr-Chr1 18357961 18359334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00852 11 451 C3H Transcription Factor Family AT4G28890 43.363 6.40e-104 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00852 K10664 - gmx:100803207 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g00852 1 18357961 18359334 Accr1g00852 1 18357961 18359334 ECH