Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00848 ATGGAACGGATCGTCGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGGAGCGGATCCTTCGGCGAAATTTACCTCGCTACTCATATCGATACTATTGAGATAGTCGCGATTAAAATTGAGAACACTAAAACTAAGCACCCACAACTGCTTTATGAGGCAAAGCTGTATCATATTCTTCAAGGAGGAAGTGGAATTCCTAGCATAAGGTGGTCTGGTGTAGACGGGGAGGACAATGTGCTAGTTATTGATTTGCTGGGACCCAGTCTTGAAGATCTGTTTGTTTATTGTGGAAGAAAGTTTTCGTTGAAGACTGTATTAATGTTGGCTGATCAGATGATCACTAGAATAGAATATGTTCATTCTAAGGGTTTTCTACATAGAGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGTAAAGCAAATCAGGTTTACATAATTGACTTTGGGCTTGCAAAACGATATCGGGACCCCACAACTAATCGTCATATTCCTTACCGGGAGGACAAAAACTTGACAGGCACTGCACGTTATGCAAGCTGTAATACTCATCTTGGTATTGAGCAAAGCCGCCGGGATGATTTGGAGTCACTAGGATATGTGCTTTTGTACTTCCTTAGAGGAAGTCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAGCAAAAATATGATAAAATACGTGAAAAGAAAGTATCAACTCCTATTGAGGTCCTAGGCAAATCTCATCCTGTAGAGTTTGCTTCGTACTTTCATTATTGCCACTCTTTGACGTTTGACCAGCGACCTGATTATGGATTTTTGAAGCGTCTATTCCGGGACCTATTTGCTCAACAAGGTTTTGAATTGGATCATGTGTTTGATTGGAACATTTTAAAGTACCAGCAGACACAGAAGATTAAAGTTCAGCCTCAAACATCTCCATCTCCTGGAGCAAGCAACAGTTATCCAATGCCAACAGGTGCTGACAATTCTCATGGTGTTTATGCTTATTCAGGGGATGTCTCAGAGCACATTAGATCTGGAAATGCTACTGGTTCTGGTGTTAAGATGCAGTTTAAATCACCAGCAGGAAAAAATATAGGTGTTAGTAATCCTCTTGACAAGAATGTTTTTGAAGAAGCAAATATGCCTTCTACTTCATATTCGCATGCTGGTACCTCAAAAAGGAACTCCTTGAAGCCTTCCTTGACTCCTGAAGCTGCAAACCCTGGTCGTGGCCGAGGCAGTAAAATTGGTCCTTCAAATAGCTGGATTTCGTCTCTGCAGCAAAATTGGTCCTTCAAGTAG 1293 0.4184 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTIEIVAIKIENTKTKHPQLLYEAKLYHILQGGSGIPSIRWSGVDGEDNVLVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDPTTNRHIPYREDKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKIREKKVSTPIEVLGKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAQQGFELDHVFDWNILKYQQTQKIKVQPQTSPSPGASNSYPMPTGADNSHGVYAYSGDVSEHIRSGNATGSGVKMQFKSPAGKNIGVSNPLDKNVFEEANMPSTSYSHAGTSKRNSLKPSLTPEAANPGRGRGSKIGPSNSWISSLQQNWSFK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00848 430 MobiDBLite consensus disorder prediction 301 321 - -
Accr1g00848 430 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Accr1g00848 430 Gene3D Transferase(Phosphotransferase) domain 1 1 321 - -
Accr1g00848 430 CDD STKc_CK1_delta_epsilon 8 282 - -
Accr1g00848 430 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00848 430 MobiDBLite consensus disorder prediction 343 366 - -
Accr1g00848 430 PANTHER CASEIN KINASE-RELATED 7 354 - -
Accr1g00848 430 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00848 430 MobiDBLite consensus disorder prediction 379 399 - -
Accr1g00848 430 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00848 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Accr1g00848 430 MobiDBLite consensus disorder prediction 379 430 - -
Accr1g00848 430 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Accr1g00848 430 FunFam Casein kinase I isoform delta-like 1 339 - -
Accr1g00848 430 MobiDBLite consensus disorder prediction 414 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00848 Accr-Chr1 18309469 18315059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00848 9 215 EF-hand Containing Proteins AT4G23650 29.577 9.51e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Accr1g00848 Pkinase 6.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00848 K08960 - gmx:100800342 736.102