Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00836 ATGTCTGTGCCAGAGAAAGACTATGTAAGCTTATCAGAGACTCCAACTCCATCAATGGAAAGCTCAGAGAAGTTTTCTCAGAGAAGAAACGGCTTGAATCTTAAGGCTACTGAACTAAGGCTCGGGTTACCCGGGTCGGAGTCACCCGAGAGGGATTCGGATTCGGAGGAAAAGAACGAGTATCCATTAGGCATACTGAAAAGTCTCGTGTCTGGGGCCAAGAGGGGCTTCTCAGATGCCATTGATGGCAGTTCTGGGAAGTGGGTTCTCTACGGAAAAGGTGGTTCTGATATGGGTTTGGGTAAAGATTGTGGCTTGTTCTCTCCCAGAGGAGCTAACTCCGGCAAGACCCCTGTCGGGTCGGATTCCGGCAAACATCAAGCGGGTTTGGGTCTCTCCGCTGTGAAAGATAGTATTCCTCAGCCAACAAAGCCTTTGCATGAGAAGAAGCCTCAGTTTCCTGCTCCTGCTTCAAAGGCACAAGTTGTGGGATGGCCACCAATCCGATCTTTTCGGAAGAACTCGATGGCATCTCAGCCTCAAAAGAATGGAGAAGATGCAGAATCAGGAAAGAGTGGTGGGTGTCTTTATGTAAAAGTGAGCTTGGATGGTGCTCCTTACTTGAGGAAGGTTGATCTCAACAACTTTGCCTCTTACAAGGAACTTTCTTCTGCACTGGAAAAGATGTTTAGTGGCTTTACAATGAGTCAATGTGGCTCTCACGGGGTTTCTGGTCGGGACAATATGAGTGAGAGTAGATTGATGGATCTGCTTAATGGTTCAGAATACGTGCTTACTTATGAGGACAAGGATGGCGATTGGATGCTAGTTGGTGATGTTCCTTGGGAGATGTTCACTGATTCTTGCAAGAGGATGAGGATAATGAAGAGTTGTGAAGCAATTGGGTTAGCACCGAGAGCGATGGAAAAGTGCAAGAGTCGGAACTAG 948 0.4736 MSVPEKDYVSLSETPTPSMESSEKFSQRRNGLNLKATELRLGLPGSESPERDSDSEEKNEYPLGILKSLVSGAKRGFSDAIDGSSGKWVLYGKGGSDMGLGKDCGLFSPRGANSGKTPVGSDSGKHQAGLGLSAVKDSIPQPTKPLHEKKPQFPAPASKAQVVGWPPIRSFRKNSMASQPQKNGEDAESGKSGGCLYVKVSLDGAPYLRKVDLNNFASYKELSSALEKMFSGFTMSQCGSHGVSGRDNMSESRLMDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRMRIMKSCEAIGLAPRAMEKCKSRN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00836 315 MobiDBLite consensus disorder prediction 45 61 - -
Accr1g00836 315 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 302 IPR003311 GO:0005634|GO:0006355
Accr1g00836 315 Gene3D - 190 308 - -
Accr1g00836 315 MobiDBLite consensus disorder prediction 7 33 - -
Accr1g00836 315 SUPERFAMILY CAD & PB1 domains 190 296 - -
Accr1g00836 315 MobiDBLite consensus disorder prediction 109 128 - -
Accr1g00836 315 ProSiteProfiles PB1 domain profile. 195 297 IPR000270 GO:0005515
Accr1g00836 315 Pfam AUX/IAA family 37 306 IPR033389 -
Accr1g00836 315 FunFam Auxin-responsive protein 190 307 - -
Accr1g00836 315 MobiDBLite consensus disorder prediction 1 62 - -
Accr1g00836 315 MobiDBLite consensus disorder prediction 136 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00836 Accr-Chr1 18075848 18078732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00836 198 305 B3 DNA Binding Superfamily AT4G23980 30.556 1.47e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr1g00836 AUX_IAA 3.1e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00836 K14484 - qsa:O6P43_007901 431.795