Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00822 ATGAATCAGATGGCTTTTGATATTAACCAAGTAGCTTCAAAGGCCGAAGAAGCGAATCTCGTCACAAATGGGTCTGCTGCTGTGAAAAACGACGAATATGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGCTTGGATCTGGAGGATCATGATCCAGAGTATGAAACTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCATGATGATGTTCAAGAGGTAGGAGATGAGATAGAAGAAGAACCTGATGAGAATTTAGGTGAAGAAGAGGGTGATATAGTTGAGGAGGAGGTGGAAGACGTTCATGGAGAACTTGAGGGTGAAGAGGATGATGAACATCCTGGAGAGGAGCAGGAGCATGAGCATGAGCATACGGAGAATGTTGATGTTGAAGAAGATGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGCAAGGAATTTGAAGTATTTGTTGGAGGCTTAGATAAAGATGCTACTGAGGATGATCTGAGGAAGGTTTTTAGTGCAGTTGGTGTGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAATAAGGGTTTTGCATTCTTGCGGTTTGCAACTGTGGAACAAGCTAAACGAGCTGTAACAGAGCTAAAAAATCCAGTGATTAATGGATAA 669 0.417 MNQMAFDINQVASKAEEANLVTNGSAAVKNDEYEVKESIDEYEKDERLDLEDHDPEYETEEYGGVDYDEKEIEHDDVQEVGDEIEEEPDENLGEEEGDIVEEEVEDVHGELEGEEDDEHPGEEQEHEHEHTENVDVEEDEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGVVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVING 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00822 222 Coils Coil 67 87 - -
Accr1g00822 222 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 22 222 - -
Accr1g00822 222 CDD RRM_SF 156 222 - -
Accr1g00822 222 MobiDBLite consensus disorder prediction 52 122 - -
Accr1g00822 222 SUPERFAMILY RNA-binding domain, RBD 149 222 IPR035979 GO:0003676
Accr1g00822 222 MobiDBLite consensus disorder prediction 39 149 - -
Accr1g00822 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 221 IPR000504 GO:0003723
Accr1g00822 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 222 IPR000504 GO:0003723
Accr1g00822 222 SMART rrm1_1 155 222 IPR000504 GO:0003723
Accr1g00822 222 MobiDBLite consensus disorder prediction 123 149 - -
Accr1g00822 222 Gene3D - 93 222 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00822 Accr-Chr1 17543335 17544888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00822 156 222 Eukaryotic Initiation Factors Gene Family AT1G49760 32.836 5.52e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00822 - - gmx:100777658 216.853