Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00787 ATGGCTCGGTCTACTAACTGGCTATCGTTTTCTTTGTCGCCAATGGAAATGCTGAGGTCTGAGAACTCGCAGTATCTTGAATACGACGCCGTTTCTGTTGCTGCCGCTCCTCCTCCTCATCCTCACTACTTCGTCGATAACTTCTATGCCAATGGATGGGGAAGCCCAAAGTCTCAGGTGCTGTGCACAGAAGCGGAGCTTAACGAGCATATGGTGGGATCATCATCATTTGCCCCATATCAGGTTCCAAAACTTGGGGATTTTCTGTGTACGGAGACTCTAGATTCATCAACCTGGACCCATATTTACGACCAAGGCTCTGCTTACTTCAGCGACCACCAAGATCTGCAAGCCATCGTTGGGTTCCAAGCATTCTCAACCAACTTAGGCTCTGAAGTGGATGACTTGGCCTCGATCGGCAAGACTCAGGGCTGTGCCAGTAGCAAGTTTGCGACTCACTCGATTGACTCGTCCGGGAATGAGCTAACCTTCTCAAGCGGCACCACCACTGGAACTTTGTCCCTCGGCGTCACCACCACCACCACCCCACAATGTGCTGGCGGCGATCAGAAAGCCACTGTTGTTGCCGTGGATTCCGATAGCTCCAAGAAGATGGCCGATACTTTCGGCCAAAGAACTTCGATTTACAGAGGAGTCACCAGACACCGATGGACGGGCAGATACGAAGCGCATCTCTGGGATAACACCTATAGGAGAGAAGGGCAGGCCAAGAAAGGGCGTCAAGGTGGATATGACAAAGAAGACAAGGCCGCAAGAGCTTACGATTTGGCAGCTCTAAAGTACTGGGGCCCCACTGCCACCACTAACTTCCCTGTTGCCAGTTATGCAAAGGAAATAGATGAGATGAAGCATGTTACCAAGCAAGAATTTATCGCCTCGCTGCGAAGGAAAAGTAGCGGATTTTCCAGGGGACCTTCTATATACAGGGGCGTCACAAGGCAACGCCAACAGGGTAGATGGGTAGCTAGAATTGGGCGTGTTGCGGGGAACAGGGATCTGTACCTTGGAACATTTGCCACTGAAGAGGAAGCAGCTGAGGCATACGATACTGCAGCCATTAAGTTTAGGGGTGCAAATGCTCTGACCAACTTTGAGATGAATCGATATGATGTTGAAGCCATCATGAAGAGTTCTCTTCCCATCGGTGTGGTGGCGAAACGCCTGAAGCTCTCGCTCGAATCCGAGCAGAAAGCGGCACCGAACAATAATAGCCAACAAATCCAATGTACCAACATGAGTAACAACATCAACTTCTCACCAATTCAGACAGTTTCCTCTGTCCCTTGTGCAATTCCATGTTATCCTGCTGCTGATGCTTACCATCACCACAATCTCTTGAACCATTTTCGTCCTTCCGATGCCGGCGCTACTGCAGAATCGGCAGTCACTAACCATTCAGCGACTCCATATCCTACCCTGCCTGCGCCTTCTGAGTTCTTTATATGGCCTCCGCATCAGTCATATTGA 1488 0.5013 MARSTNWLSFSLSPMEMLRSENSQYLEYDAVSVAAAPPPHPHYFVDNFYANGWGSPKSQVLCTEAELNEHMVGSSSFAPYQVPKLGDFLCTETLDSSTWTHIYDQGSAYFSDHQDLQAIVGFQAFSTNLGSEVDDLASIGKTQGCASSKFATHSIDSSGNELTFSSGTTTGTLSLGVTTTTTPQCAGGDQKATVVAVDSDSSKKMADTFGQRTSIYRGVTRHRWTGRYEAHLWDNTYRREGQAKKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVASYAKEIDEMKHVTKQEFIASLRRKSSGFSRGPSIYRGVTRQRQQGRWVARIGRVAGNRDLYLGTFATEEEAAEAYDTAAIKFRGANALTNFEMNRYDVEAIMKSSLPIGVVAKRLKLSLESEQKAAPNNNSQQIQCTNMSNNINFSPIQTVSSVPCAIPCYPAADAYHHHNLLNHFRPSDAGATAESAVTNHSATPYPTLPAPSEFFIWPPHQSY 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00787 495 CDD AP2 214 280 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 Gene3D AP2/ERF domain 314 374 IPR036955 GO:0003700|GO:0006355
Accr1g00787 495 Gene3D AP2/ERF domain 215 280 IPR036955 GO:0003700|GO:0006355
Accr1g00787 495 ProSiteProfiles AP2/ERF domain profile. 314 372 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 Pfam AP2 domain 314 364 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 Pfam AP2 domain 215 270 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 CDD AP2 313 372 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 179 413 - -
Accr1g00787 495 SUPERFAMILY DNA-binding domain 214 279 IPR016177 GO:0003677
Accr1g00787 495 ProSiteProfiles AP2/ERF domain profile. 215 278 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 SMART rav1_2 215 284 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 SMART rav1_2 314 378 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 SUPERFAMILY DNA-binding domain 313 373 IPR016177 GO:0003677
Accr1g00787 495 PRINTS Ethylene responsive element binding protein signature 354 374 IPR001471 GO:0003700|GO:0006355
Accr1g00787 495 PRINTS Ethylene responsive element binding protein signature 216 227 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00787 Accr-Chr1 16660863 16664740 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00787 81 495 AP2-EREBP Transcription Factor Family AT5G10510 52.756 1.02e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr1g00787 AP2 1.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00787 K09285 - qsa:O6P43_025207 587.415