Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00762 ATGGAGAAAGAACTGATGCGACTGTATGAAGCAGTGAAGAAGGCGGCCGACGCAGCAGCAACCTCAACCGACAACCAAGTCGAAGAAAATCGATGCCTTGATGCGTTCAAGCTGCTCAAGAAATTTCCTGTCAATCTTGAAATTCTGCGATACACCCAAGTTGGCAAACATCTAAGAGTTCTAACAAAGCATCCCAGAAAGAAGATCCAGGCTTTTGCTAAAAATCTGGTAGATATATGGAAAGGAATAGTCCTCAAGGAAATAAGCGAAAATAAGAAACAAAAAGTTTATCAGAAGATTTCAAAGGCTGAGAAGAAACAAGTTACTGAAATATTGAAGAGGGCATCCCCAAGACCTACGGCTCCTTTAGAACAAAAAACTATGATTAAAATTGGTGATGTGACACGAGACAAAATAAGGGAAATCCTTCAGGAGGCATTGTCTAGGGTTTCAGGGGAGGCAGATGAAGCAATCAAGGATCAGGTTAATGCATGTGACCCTATAAGGGTTTCTGTTTCTGTAGAGTCTATAGTATTTCAGAAGTGGGGTTCTTTTAATAAAGGGGATCGAAGTATAAAGATCAAGTACAGGTCTTTGATGTTTAACCTCAAGGATCCAAATAACAAAGACTTCCGAAGAAGAGTTCTGCTCGGAGAATTCAAACTAGACCAGATCGTGAACATGAGAACAGAAGACATGGCTAGTGATGAGAGGAAGAAGGAGATTGAGGAGATCAGAATGAGAGCTTTGTTGAAGTGTAAGGATGGACAGGAACTAAAAGGCACAACTGATCAGTTCGTCTGTGGGAAATGTCGAAAAAGAGAGTGCACTTATTATCAGATGCAGACTCGTAGCGCAGATGAACCCATGACCACCTATGTTACATGTGTTTCGTGCAATCATCATTGGAAGTTTTGTTAG 921 0.4104 MEKELMRLYEAVKKAADAAATSTDNQVEENRCLDAFKLLKKFPVNLEILRYTQVGKHLRVLTKHPRKKIQAFAKNLVDIWKGIVLKEISENKKQKVYQKISKAEKKQVTEILKRASPRPTAPLEQKTMIKIGDVTRDKIREILQEALSRVSGEADEAIKDQVNACDPIRVSVSVESIVFQKWGSFNKGDRSIKIKYRSLMFNLKDPNNKDFRRRVLLGEFKLDQIVNMRTEDMASDERKKEIEEIRMRALLKCKDGQELKGTTDQFVCGKCRKRECTYYQMQTRSADEPMTTYVTCVSCNHHWKFC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00762 306 SUPERFAMILY Elongation factor TFIIS domain 2 127 237 IPR036575 GO:0006351
Accr1g00762 306 ProSitePatterns Zinc finger TFIIS-type signature. 268 303 IPR001222 GO:0003676|GO:0006351|GO:0008270
Accr1g00762 306 PIRSF TFIIS 1 306 IPR035100 -
Accr1g00762 306 Gene3D - 235 306 - -
Accr1g00762 306 Pfam Transcription factor S-II (TFIIS), central domain 132 251 IPR003618 GO:0006351
Accr1g00762 306 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 93 IPR035441 -
Accr1g00762 306 CDD TFIIS_I 24 84 - -
Accr1g00762 306 CDD Zn-ribbon_TFIIS 260 305 - -
Accr1g00762 306 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 15 306 - -
Accr1g00762 306 FunFam Probable Transcription elongation factor S-II 235 306 - -
Accr1g00762 306 NCBIfam transcription elongation factor S-II 17 306 IPR006289 GO:0003676|GO:0005634|GO:0006368
Accr1g00762 306 ProSiteProfiles TFIIS central domain profile. 135 261 IPR003618 GO:0006351
Accr1g00762 306 Gene3D - 115 234 IPR036575 GO:0006351
Accr1g00762 306 SUPERFAMILY Zinc beta-ribbon 261 304 - -
Accr1g00762 306 Coils Coil 86 106 - -
Accr1g00762 306 SMART TFS2_5 8 86 IPR003617 GO:0005634
Accr1g00762 306 ProSiteProfiles Zinc finger TFIIS-type profile. 264 304 IPR001222 GO:0003676|GO:0006351|GO:0008270
Accr1g00762 306 ProSiteProfiles TFIIS N-terminal domain profile. 10 87 IPR017923 -
Accr1g00762 306 Pfam Transcription factor S-II (TFIIS) 267 304 IPR001222 GO:0003676|GO:0006351|GO:0008270
Accr1g00762 306 Pfam TFIIS helical bundle-like domain 37 84 IPR017923 -
Accr1g00762 306 SMART Cys4_2 266 305 IPR001222 GO:0003676|GO:0006351|GO:0008270
Accr1g00762 306 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 100 IPR035441 -
Accr1g00762 306 SMART mid_6 137 244 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00762 Accr-Chr1 16017849 16018769 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Accr1g00762 TFIIS_M 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00762 K03145 - vvi:104881085 320.472