LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g00724	ATGGCAAATCGACTGAAGGAAGAAGAGAAAAATGAGCGAATAATTCGAGGTCTTCTCAAACTCCCTGCGAATCGAAGATGTATTAATTGCGACAGTCTGGGGCCACAATACGTATGCACAAATTTCTCAACGTTTGTTTGCACAAACTGTAGCGGGATACACCGGGAATTTACACATCGAGTAAAGTCAATATCCATGGCCAATTTCACTTCACAAGAAGTTCTTGAACTTCAGGAAGGAGGAAATCAGCATGCAAAAGAAGTTTATTTTAAAGAATGGGACCTGAAAAATCATTCTCTTCCTGATAACAGTGATGTTGGCAGGCTCCGCAACTTTATTAAACAAGTTTATGTGGATAAAAAGTTCACTGGTGAGAGGACCTATGACAAATCACAGAGAGTAAATACAGGTGACAAGGATCATTTCTCAGAAAACTCGAGAGTTCAATCATATCAGGGTGATGCAGAAAGCCTTCCATATGATGAAACACATAAACGCTGGTATAGTGACAGCTCTAGTCTGGGTGGGAGAAGTCCTGGGTATGATCAAGAAAGTAGGCAGTACAGTAATGACAAGAGAAGTCCTAGTCATCCTCCGATTATCAATGATTGGCGTCGAGAAGATAGATTTGGAGATGGAAGGAGGTTTGAAGGTCGTAGAGCATCTGATGGAGATTATAAGCTGGAAGGTCATTTGCCTGGGCAAGCCAACAACCTGGATTCTTCAAGTCCACCTGTGGGTCGGTCTCTTAGAGATATTTTGGGAGAAAATGTGGTGCCTCCTCAAATAAGTAGACCGCCTGAAACAAATAATAAGAAAGCTAATGATGGCTCAGCTCTCACACAGAGGACTGTATCGTCCAGTAGCTTGGCATCCAGCGTTCGAAACCCTGCAGAAGTTAAGCTTCAGACTACTAAGAGCCTTATTGATTTTGATGCTGAGCCTGAGCCTCCTGTAGCTCCAGCAATTCCTCGCACAGAACAATTGACTGCCCAATCCATTGTGGCGCAACCAAATTCCAGCGATGTCAACAATTGGGCCTCTTTTGATGTTGCCCTAGAAGCAAAAGCAACTCAAACTCCTTCAAATGTAAATACAATAGAATCCATGCTTTCCCAGTTGTCAGTATCATCATCATTACCAGCTCATGCTCCTCAAGTCCAACATAGTTCCAGCATCTTAACACCTGTTCCTGGGGGCAGTATGACATTACAAAGAACTGGGAACTTATTTGTTTCACCTGCGGGGCCTGCACCAGCACCATCTCTTACTGCTACTGCTGTTGGAGCTGCAACTATTAGCAGCTTTGCGACTTTTCCATCCAGTGGTGCTTCAGCATGGCAGCATCCGCAGCCTTTGTTCCCTGCCCATGTTGGTCAGTCTCTGACTCATCAATCTACACAACCACCAGTAGGAGCACTGAATAATCAGCCATGGAGTATACCTTCAGCGCCAACAATACAAGGCCATCCAAGCATGACACTGCCACACGTGTCCCATCCTATCTCTAAGCCTGCAACTGAGACTAGCTCCAGTGTGGCTTCAGGACCGTCTGTAGAAGTAAAATCAGGTGGAACAAAAGAACTTCCTGAGAATCTTTTTACTGTAAAGTATTCTTCCTTCCCTGCTGCAATTCCAGGGTGGCAAATGGTTCCTCCTCATGGCATGGGAATGTCAATGCCATATAATACCATGTATTCTTCCTTTCCTGCTGCAATTTCAGGGTGGCAAATGGTTCCTCCTCATGGCTTGGGAATGTCAATGCCATATAATATCGTGCCCATGCCAGGTCCTCAGCGACCATCAAAATCAACAAATCCATTTGGTATTGGCAGTGAACCACCTTCAGTTCAAACCACAACTTTTTCCGTGAGACCATCCTTGCCAAGTGTATCAACTTCAGGTTTAATGCCTCCTTCAAGCCTAAGTAATCCATCACTTACGTGGAATCCACCTGGTTACGGATTAGTGCTGTCCCAACAAACACAACCTCATCCACCAGCAGTTGCAACAAGGCCTTACATGGGGCAACAAGTGCAAACGAACGTGGCAATGCCAAAATCTGAGGGAGCTGCTTTTGGCTTCTCAAACTTAGATCAGCGTCTGGCAAGTACATTCTCAGCTCCTGCTTCTTCAAATCTTTCTTCTGCGGGAAGGAATCCATTTGGATGA	2172	0.4484	MANRLKEEEKNERIIRGLLKLPANRRCINCDSLGPQYVCTNFSTFVCTNCSGIHREFTHRVKSISMANFTSQEVLELQEGGNQHAKEVYFKEWDLKNHSLPDNSDVGRLRNFIKQVYVDKKFTGERTYDKSQRVNTGDKDHFSENSRVQSYQGDAESLPYDETHKRWYSDSSSLGGRSPGYDQESRQYSNDKRSPSHPPIINDWRREDRFGDGRRFEGRRASDGDYKLEGHLPGQANNLDSSSPPVGRSLRDILGENVVPPQISRPPETNNKKANDGSALTQRTVSSSSLASSVRNPAEVKLQTTKSLIDFDAEPEPPVAPAIPRTEQLTAQSIVAQPNSSDVNNWASFDVALEAKATQTPSNVNTIESMLSQLSVSSSLPAHAPQVQHSSSILTPVPGGSMTLQRTGNLFVSPAGPAPAPSLTATAVGAATISSFATFPSSGASAWQHPQPLFPAHVGQSLTHQSTQPPVGALNNQPWSIPSAPTIQGHPSMTLPHVSHPISKPATETSSSVASGPSVEVKSGGTKELPENLFTVKYSSFPAAIPGWQMVPPHGMGMSMPYNTMYSSFPAAISGWQMVPPHGLGMSMPYNIVPMPGPQRPSKSTNPFGIGSEPPSVQTTTFSVRPSLPSVSTSGLMPPSSLSNPSLTWNPPGYGLVLSQQTQPHPPAVATRPYMGQQVQTNVAMPKSEGAAFGFSNLDQRLASTFSAPASSNLSSAGRNPFG	723

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g00724	723	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	135	-	-
	Accr1g00724	723	Pfam	Putative GTPase activating protein for Arf	13	124	IPR001164	GO:0005096
	Accr1g00724	723	MobiDBLite	consensus disorder prediction	129	298	-	-
	Accr1g00724	723	MobiDBLite	consensus disorder prediction	169	185	-	-
	Accr1g00724	723	MobiDBLite	consensus disorder prediction	198	227	-	-
	Accr1g00724	723	MobiDBLite	consensus disorder prediction	263	298	-	-
	Accr1g00724	723	MobiDBLite	consensus disorder prediction	503	519	-	-
	Accr1g00724	723	MobiDBLite	consensus disorder prediction	129	145	-	-
	Accr1g00724	723	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Accr1g00724	723	MobiDBLite	consensus disorder prediction	500	525	-	-
	Accr1g00724	723	MobiDBLite	consensus disorder prediction	615	639	-	-
	Accr1g00724	723	Gene3D	Arf GTPase activating protein	1	135	IPR038508	-
	Accr1g00724	723	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Accr1g00724	723	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Accr1g00724	723	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Accr1g00724	723	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Accr1g00724	723	CDD	ArfGap_AGFG	12	122	-	-
	Accr1g00724	723	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Accr1g00724	723	PANTHER	ARFGAP/RECO-RELATED	1	723	IPR044820	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g00724	Accr-Chr1	15104022	15109457	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g00724	12	89	C2H2 Transcription Factor Family	AT4G05330	36.585	7.96e-11	62.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g00724	-		-	pcin:129292898	1053.89