Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00645 ATGGGAATTTCTTCGAGTAGCGGAAGAAGAAGCAATTATTTTCACAACCCACATCTTCCCGCACCTTTCTATTACTCGGCAGAATCTCCTCCTCCTCCTCCGCCGCCGCCTCAAGGCTACTATTTCACCTCAGCCACGCCTTATGCACTGCAAAGCAACAACTATGTGCCTCCCCCTCCTCAAAACCATGTCTTCTGTTACTCAAATGCGTATAGCAATTGTTCCAATTATTCTAGTTCTATGGTGGTTAGGTTTCAGTATCCCCCATCTTATTTTCTAAATCATGCTAATGGGTGGGCTCCAATTTTTCCTTCGGTGGTTGGTCCTGTCGTCTCGCCACCGCCCTATGTTGATCATCGAACGGCTAAGAAGATCAGGAACGATGTGAACGTGCATAAGGACACATTGCGGCTGGAGGTTGATGAGCATTACCCTGATCAGCGCTTGGTTTCGTTCGTTTTCGATGCCCTGCATGATGGGAGCATTACTATTATCTACTTTGCAAAGGAGGAGGAGAAATGTAGGTTTGTTCCATTGTTTCCTAATGTATTTGAGCCAATAAGAATTCCTTTTCAGAAAGGAATAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATTGACAAAGGGTTTTTCGAGTTGGATGATCTGTCAAAACGCTCACTTGGAGATGATGTCTTCCCCCTTGTGATATGTGCTGAAACATGTTTGATAACTTCATCAGCTGATGAAAATCTTGGCAATGCCATGCTAGATTTTTCTCCTCACATGCAGATTACTCAAGCCTTTGTAGAGAAAGGCAATGGTGATGGTCCTTTACAAGTAAAAGTAGACACGCAGATTTTGTGGATTGATGGGGTCCGTTATGAGTTAAGAGAGTTATATGGAATAGGAGGCTCAGCAGCAGCTGGTTTTGATGACAATGATTCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGACACAGCCGTGTTACCTTGTCGACACTTGTGCATGTGCAGTGACTGCGCGCAAACTTTGTGGCTTCAATCGAATAAATGCCCAATATGCCGTCAATCTATCCAGGAACTTATAGAAATTAAGATAAACAATGTTGATTTTTGGGATCTTAGGTGGGTAAGTTGA 1131 0.4385 MGISSSSGRRSNYFHNPHLPAPFYYSAESPPPPPPPPQGYYFTSATPYALQSNNYVPPPPQNHVFCYSNAYSNCSNYSSSMVVRFQYPPSYFLNHANGWAPIFPSVVGPVVSPPPYVDHRTAKKIRNDVNVHKDTLRLEVDEHYPDQRLVSFVFDALHDGSITIIYFAKEEEKCRFVPLFPNVFEPIRIPFQKGIGQKFCQPSGTGIDKGFFELDDLSKRSLGDDVFPLVICAETCLITSSADENLGNAMLDFSPHMQITQAFVEKGNGDGPLQVKVDTQILWIDGVRYELRELYGIGGSAAAGFDDNDSGKECVICMTEPKDTAVLPCRHLCMCSDCAQTLWLQSNKCPICRQSIQELIEIKINNVDFWDLRWVS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00645 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 363 IPR013083 -
Accr1g00645 376 FunFam probable E3 ubiquitin-protein ligase LOG2 298 363 - -
Accr1g00645 376 Pfam Zinc finger, C3HC4 type (RING finger) 312 358 - -
Accr1g00645 376 PANTHER MAHOGUNIN 38 364 IPR045194 GO:0061630
Accr1g00645 376 ProSiteProfiles Zinc finger RING-type profile. 314 353 IPR001841 -
Accr1g00645 376 SMART ring_2 314 352 IPR001841 -
Accr1g00645 376 SUPERFAMILY RING/U-box 308 359 - -
Accr1g00645 376 CDD mRING-HC-C3HC5_MGRN1-like 312 353 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00645 Accr-Chr1 12318591 12323111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00645 88 368 C3H Transcription Factor Family AT3G06140 59.375 7.21e-107 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00645 - - qsa:O6P43_021626 497.278