Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr1g00593 | ATGGTTAAGTTTCTGAAGCCTAACAAGGCAGTGATCCTCCTTCAAGGGCGCTATGCCGGTCGCAAGGCCGTGATTTTGCGCACTTTCGATGACGGCACTCGCGATCGCGCATACGGCCATTGCTTGGTCGCCGGAATTAAGAAGTATCCAAGTAAAGTCATCAAGAAGGATTCCGCCAAGAAGACGGCAAAGAAGTCTAGGGTTAAGGCCTTCGTCAAGCTCGTGAACTACCAGCACCTCATGCCTACGCGTTACACCCTTGATGTGGATCTGAAGGATGTCGTGACGATCGATTCTCTTCAATCGAAGGACAAGAAGGTGACTGCCTTGAAGGAGACTAAGAAGAGGTTTGAGGAGAGGTTCAAAACCGGCAAGAACAGGTGGTTCTTCACCAAGCTTAGGTTTTGA | 408 | 0.4975 | MVKFLKPNKAVILLQGRYAGRKAVILRTFDDGTRDRAYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTALKETKKRFEERFKTGKNRWFFTKLRF | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr1g00593 | 135 | PANTHER | 60S RIBOSOMAL PROTEIN L27 | 1 | 135 | IPR001141 | GO:0003735|GO:0005840|GO:0006412 | |
| Accr1g00593 | 135 | Gene3D | - | 1 | 135 | IPR038655 | - | |
| Accr1g00593 | 135 | SUPERFAMILY | Translation proteins SH3-like domain | 2 | 135 | IPR008991 | - | |
| Accr1g00593 | 135 | ProSitePatterns | Ribosomal protein L27e signature. | 124 | 135 | IPR018262 | GO:0003735|GO:0005840|GO:0006412 | |
| Accr1g00593 | 135 | Coils | Coil | 100 | 120 | - | - | |
| Accr1g00593 | 135 | CDD | KOW_RPL27 | 6 | 88 | IPR041991 | - | |
| Accr1g00593 | 135 | FunFam | 60S ribosomal protein L27 | 1 | 135 | - | - | |
| Accr1g00593 | 135 | Pfam | Ribosomal L27e protein family | 52 | 135 | IPR001141 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr1g00593 | Accr-Chr1 | 11402290 | 11402697 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr1g00593 | 1 | 135 | Cytoplasmic Ribosomal Protein Gene Family | AT3G22230 | 85.185 | 7.44e-84 | 240 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr1g00593 | K02901 | - | csv:101212413 | 246.514 |