Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00563 ATGCCTATAATTCGAAGCCTGATCCACGATATGAGATCCAGGTCGCGCCGTGTGGTGCAGGACGGTTCCTCAATGGCGGAGCCTGTAACTGATGGCTTGAAGCAGAGTTCCTGGGCCAACATGCCTCAGGAGCTTCTCAGGGAGGTCTTGCTCCGAATTGAGAACTCCGAGAGCTCTTGGCCGCCACGCAAGAGTGTGGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGGGAGATCACCAAGGAGATCGTCAAGCCCCCTGAAGTTTCCGCCAAGATCACTTTCCCGATCTCCGTTAAGCAGCCTGGTCCCAGAGATAATCTTCTTCAGTGCTTTATAAAGCGCAACCGCTCTTCCCAAACATATTATTTGTTTCTTAGTTTAACTAGTGCTCTAGCTGATGATGGGAAGTTCCTTTTGGCTGCACACAAGTGCAGGCGTCCAACCTGCACAGATTATGTCATCTCTCTAAATGCTGATGATATGTCAAATGGAAGCTACACCTATATTGGGAAGCTGCGGTCAAATTTTCTGGGGACAAAGTTCACAATATATGACGGCCAGCCACCTCATGCTGGCGCAAAACTTTCAAAAAGTCGCTCCTCCAGGCTGGTGAATCTGAAGCAAGTTTCACCCAGGGTCCCCACTGGTAACTATCCAGTGGCCCACATTTCATATGAATTAAATGTGTTAGGCTCCAGCAGGGGGCCTAGGAGAATGAATTGTGTCATGGATTCCATTCCTGTCTCTGCAATTGAACCGGGAGGAGTAGCGCCAACACAGACCGACTTTTCTCTAAGCAACATTGATGTGTTTCCTTCATTTCCTTTTTTCCGATCAAAATCAAAGCATATGGAAAAATCTGAATCCGGACCCCTGGGCGAACAAAAGGATGGGGTGCTAGTATTGAGGAACAAATCTCCAAGGTGGCATGAGCAGCTCCAATGTTGGTGCTTAAACTTTCATGGGCGGGTGACAGTAGCTTCAGTGAAAAACTTTCAGCTAGTGGCTTCACCAGAAAATGGGGTTGCGGGACCAGAACATGAGAAGATTATCCTCCAGTTTGGCAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCCATCTCGGCTTTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTCGATACCAAGATTGCTTGTGAATGA 1176 0.4847 MPIIRSLIHDMRSRSRRVVQDGSSMAEPVTDGLKQSSWANMPQELLREVLLRIENSESSWPPRKSVVACAGVCRSWREITKEIVKPPEVSAKITFPISVKQPGPRDNLLQCFIKRNRSSQTYYLFLSLTSALADDGKFLLAAHKCRRPTCTDYVISLNADDMSNGSYTYIGKLRSNFLGTKFTIYDGQPPHAGAKLSKSRSSRLVNLKQVSPRVPTGNYPVAHISYELNVLGSSRGPRRMNCVMDSIPVSAIEPGGVAPTQTDFSLSNIDVFPSFPFFRSKSKHMEKSESGPLGEQKDGVLVLRNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00563 391 CDD F-box_AtTLP-like 38 82 - -
Accr1g00563 391 ProSitePatterns Tub family signature 2. 376 391 IPR018066 -
Accr1g00563 391 Pfam F-box domain 38 84 IPR001810 GO:0005515
Accr1g00563 391 PANTHER TUBBY-RELATED 25 389 - -
Accr1g00563 391 Gene3D - 31 83 - -
Accr1g00563 391 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Accr1g00563 391 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Accr1g00563 391 PRINTS Tubby superfamily signature 303 320 IPR000007 -
Accr1g00563 391 PRINTS Tubby superfamily signature 321 337 IPR000007 -
Accr1g00563 391 PRINTS Tubby superfamily signature 348 367 IPR000007 -
Accr1g00563 391 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Accr1g00563 391 PRINTS Tubby superfamily signature 369 391 IPR000007 -
Accr1g00563 391 SUPERFAMILY F-box domain 30 81 IPR036047 GO:0005515
Accr1g00563 391 Pfam Tub family 99 386 IPR000007 -
Accr1g00563 391 ProSitePatterns Tub family signature 1. 321 334 IPR018066 -
Accr1g00563 391 SUPERFAMILY Tubby C-terminal domain-like 87 391 IPR025659 -
Accr1g00563 391 Gene3D Tubby Protein; Chain A 96 391 IPR025659 -
Accr1g00563 391 FunFam Tubby-like F-box protein 95 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00563 Accr-Chr1 10706381 10708931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00563 12 391 TUB Transcription Factor Family AT2G47900 74.151 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr1g00563 Tub 2e-110 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00563 K19600 - cave:132168101 666.766