Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00561 ATGGGCTGTGTGTTCGGAAGGCCGGCGTCGGTGAAGTTTTCCGCCGGAGAGACGGTGTCGTCGGAGAGGGAGAAAGCGAGGGAGGAGAGGAAAGAGGAACTTGCAGCGGCGGCGAAAGCAGAAGTGACGGAGGTTCAGAATGGTGGGAATCGGAAGGAAGGTGGAGAAGAGAAGAGTACACGGCCAAGAGGGGAACGGCGGCGATCTTCGCGGCCAAATCCACGGCTGAGCAATCCACCTAACCATGTACACGGCGAGCAATTGGCGGCGGGATGGCCTTCTTGGCTCTCTAAGGTCGCAGGGGAAGCCATCAACGGGTTGACGCCTAGAAGAGCTGACACTTTTGAAAAGCTTGATAAGATTGGCCAAGGCACATACAGTAATGTATACAAAGCGAGAGATTCTTTAACTGGGAAAATTGTGGCCTTAAAAAAGGTTAGATTTGACAATTTGGAGCCAGAGAGTGTGAAATTCATGGCCAGAGAGATTCTCATATTACGTCGATTGGATCATCCCAATGTTGTCAAACTGGAAGGTTTAGTGACTTCTAGAATGTCATGTAGCTTGTATCTTGTTTTTCAATACATGGAGCATGATCTGGCTGGTCTTGCTACCAGCCCATCAATTAAGTTCACGGAGCCTCAGGTTAAGTGTTACATGAAGCAGCTGTTTTCTGGTTTGGAACACTGTCACAACCGTCGCGTGTTGCATCGAGATATAAAGGGGTCAAACCTTCTCATTGACAATGAAGGGATTCTTAAAATAGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCTATGACAAGTAGGGTCGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACCGATTATGGTGTGGGGGTGGACCTCTGGAGTGCAGGTTGCATTCTTGCAGAATTGTTGGCTGGAAAGCCAATTTTGCCCGGTCGAACAGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGACTATTGGAAAAAGTCAAAGTTGCCTCATGCTACCATTTTTAAGCCCCAACAATCATACAAGCGATGCATATCAGACGTGTTCAAAGATTTTCCAGCGTCATCCTTGCCACTAGTTGAGACCCTTCTTGCAATTGATCCGGCTGAACGTCAGACCGCCACCGCCGCGTTGCAGAGTGAATTCTTTACTACGAAACCTTATGCTTGTGAGCCATCTAGCCTTCCAAAATATCCTCCCAGTAAAGAGATGGATGCAAAGCTACGAGATGAAGAAGCTAGAAGATTGAGAGCAGCAGGCAAAGCTAATGCTGATGGTGCTAAGAAATCTCGTACACGTGACCGGGGAGGGAGGGGAATTCCAGTTCCAGAAGCCAATGCTGAGCTTCAAGCAAATATTGATAGACGACGATTGATAACGCATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCACCCCACCAAGACGGAACTCTAGGCTACACCCTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCTCCTGATGTTTCGTTTAGCTCTACAAACTTGTCATACCCAAAAGCCAATATCCAAACATGGTCTGGTCCATTGGTGGAACCTGCCGGTGGTATGGGTGCCCCGAGGAGAAAGAAGAACGTGGCAGGTGAATCGAAATCATCAAAGAAAGACTCAAAAAGATGA 1698 0.4753 MGCVFGRPASVKFSAGETVSSEREKAREERKEELAAAAKAEVTEVQNGGNRKEGGEEKSTRPRGERRRSSRPNPRLSNPPNHVHGEQLAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLATSPSIKFTEPQVKCYMKQLFSGLEHCHNRRVLHRDIKGSNLLIDNEGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPILPGRTEVEQLHKIFKLCGSPSEDYWKKSKLPHATIFKPQQSYKRCISDVFKDFPASSLPLVETLLAIDPAERQTATAALQSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGAKKSRTRDRGGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGTLGYTLGSSHHMDPVFDPPDVSFSSTNLSYPKANIQTWSGPLVEPAGGMGAPRRKKNVAGESKSSKKDSKR 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00561 565 Gene3D Transferase(Phosphotransferase) domain 1 198 438 - -
Accr1g00561 565 CDD STKc_CDK9_like 115 399 - -
Accr1g00561 565 MobiDBLite consensus disorder prediction 433 565 - -
Accr1g00561 565 Coils Coil 23 43 - -
Accr1g00561 565 MobiDBLite consensus disorder prediction 514 530 - -
Accr1g00561 565 Pfam Protein kinase domain 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00561 565 SMART serkin_6 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00561 565 MobiDBLite consensus disorder prediction 1 86 - -
Accr1g00561 565 MobiDBLite consensus disorder prediction 50 72 - -
Accr1g00561 565 ProSiteProfiles Protein kinase domain profile. 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00561 565 PANTHER CELL DIVISION PROTEIN KINASE 113 403 - -
Accr1g00561 565 SUPERFAMILY Protein kinase-like (PK-like) 110 404 IPR011009 -
Accr1g00561 565 Gene3D Phosphorylase Kinase; domain 1 103 197 - -
Accr1g00561 565 FunFam probable serine/threonine-protein kinase At1g54610 198 439 - -
Accr1g00561 565 MobiDBLite consensus disorder prediction 466 488 - -
Accr1g00561 565 MobiDBLite consensus disorder prediction 18 38 - -
Accr1g00561 565 FunFam probable serine/threonine-protein kinase At1g54610 102 197 - -
Accr1g00561 565 MobiDBLite consensus disorder prediction 550 565 - -
Accr1g00561 565 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Accr1g00561 565 MobiDBLite consensus disorder prediction 433 454 - -
Accr1g00561 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00561 Accr-Chr1 10694332 10698604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00561 110 437 Core Cell Cycle Gene Families AT5G10270 52.616 6.88e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Accr1g00561 Pkinase 6.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00561 K08819 - qsa:O6P43_003509 951.814