Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00558 ATGGATCGTCTCCCAATTGGCTCTGCTAGGCCATTGCCATTGGTCTCTCAACTTCCGCCTCCTTCTGATGAACCTGTTGTTGCAATGTCCAAGGTGGCGGCAGGGAAAATCTCCGGCAAGCGTATTAGAGATGTAGACAGGAGTGAGAGCCTTGTGATTGAGCGTGATCGGAGGTTGAAGATGAATCATATGTTCGCTGAGCTTCAATCCACCGTTCCTGGTCTCTTTTGCAAGGCTACAAGGGAAGTGATTGTGAATCAAACAATAAACTACATCAAGGCCCTTGAGAAGAAGAAGAAGAGATTGGAAGAGCTTAAGGGGTTAATAATGGAACCAGAAGCAGCTGGAGGGAACTTGATGCTTCCATGTACAAGCAATAAGAATTCCTCGATTACAGTCTCTGTATCTAGAAACGTCGCCTTCTTTGGGATTCAATCAAAAGCTCAATTTGGTTTGATCACAGCGATCTTCAAGGTCTTCTACAAGCACAATGCTGAAATTTTAGCTGCAAATGTTTCCGTCGACAATGGAGAATTGACATTGGCAATCACAGCTTCATTAGGTAATGATGGTGATAATGGTGGAAATGCTACAGCTGAGAAAATAAGGGGAGAGATTCTGGGTTTGTAG 630 0.4413 MDRLPIGSARPLPLVSQLPPPSDEPVVAMSKVAAGKISGKRIRDVDRSESLVIERDRRLKMNHMFAELQSTVPGLFCKATREVIVNQTINYIKALEKKKKRLEELKGLIMEPEAAGGNLMLPCTSNKNSSITVSVSRNVAFFGIQSKAQFGLITAIFKVFYKHNAEILAANVSVDNGELTLAITASLGNDGDNGGNATAEKIRGEILGL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00558 209 Coils Coil 85 105 - -
Accr1g00558 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Accr1g00558 209 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 39 202 IPR044278 GO:0003700|GO:0006355|GO:0009960
Accr1g00558 209 SMART finulus 51 101 IPR011598 GO:0046983
Accr1g00558 209 Gene3D - 41 109 IPR036638 GO:0046983
Accr1g00558 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 109 IPR036638 GO:0046983
Accr1g00558 209 MobiDBLite consensus disorder prediction 1 23 - -
Accr1g00558 209 Pfam Helix-loop-helix DNA-binding domain 52 96 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00558 13 103 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.052 6.50e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr1g00558 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00558 - - gmx:102670256 155.992