Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00545 ATGGAGCGGTTCGGCCGGACTAGTGAAGGGTCGCAGTCTGATCCGTCACAGGAATGGACCGGAACAGGAGGCGAAACAGGGCTCGAAGAGCCAGTGTGGCAATTGGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAAGCTGATTGTATGTACTATTTGAGGACTGGTTATTGTGGGTACGGCTCGCGATGTCGGTTCAATCATCCCCGAGACCGTGGCGCGGTTATTGGAGCTGCGAGGACTGGAGCGGAGTACCCAGAACGAGCGGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCTTGCAAATTTGGTCCGTCCTGTAAGTATCACCATCCTAGGCAGGGAGGAGGCACTGTTAGCTCTGTGTCACTGAATTATTATGGATTTCCATTGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAATTTGGCGCAACTTGTAAATTCCACCATCCGCAGCCTGATGGCATGCCAATTCCAGCACAAACACCAGTTCCCCCGGTTTCACCTCTGCATGTACCAATGCCTTCACCATTATATTCAACTGTACAGCCTCCATCTGGCCCTTCATCATCACAATATGGTGTAATGGTTGCAACTCCAAGGCCACAACTGCTACCTGGCTCATTAGTCCATAGCCCCTATGGGCATGTGGTTTTGTCCCCGGCTGTAGTCCCTTTTCCAGGTTGGAGTCCTTATCAGCCTCCTGCAAGCCCCTTAGTTCCCTCTAGTACTCCATCTAACGTTGGCTCAGCACAGCTTTATGGGATAGGGCAGCTAACGTCACCAGCATCAACTTATTATGGACAGTATCAACCTTCAGGCTCCTCAGTTGGTCCTTCGGGCAGTAGTCAGAAGGAACACTCATTTCCAGAAAGACCTGGTCAGCCAGAATGTCAGTATTATATGAAAACGGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCTGAATTAGTTGCTCCAAAAACAAATGTGGTCCTTAGTCCTGCGGGCCTTCCTTTGCGCCCGGGTGCACCTCCTTGCACTCATTATGCACAGCGTGGGGTGTGTAAATTTGGCCCGGCATGCAAATTTGATCATCCTATTGGAGCACTGAGCTATAGTCCGTCTGCTTCCTCCCTAGCTGATATGCCAGTTGCACCCTATCCTGTGGGCTCATCAATTGGCACTCTTGCTCCGTCGTCTTCATCGTCAGAATTGCGACCTGAACTTGCCTCAGGATCTGGCAAGGAGTCTTCATCATCCAGAATATCTTCATCAATGAGCACATCAACGGCATCAGTTGGTTTAACCTTGTCATCTGGGGGATCCATTTCTCAATCAACTGCTCAACAATCTGCTCAGAGTTCCAGTCCTTCAGCAATCACCAATAATACCACAAGCAGCTCCATCTCTCACACCTCTAGTTAA 1455 0.499 MERFGRTSEGSQSDPSQEWTGTGGETGLEEPVWQLELGGGESYPQRPDEADCMYYLRTGYCGYGSRCRFNHPRDRGAVIGAARTGAEYPERAGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTVSSVSLNYYGFPLRPGEKECSYYVKTGQCKFGATCKFHHPQPDGMPIPAQTPVPPVSPLHVPMPSPLYSTVQPPSGPSSSQYGVMVATPRPQLLPGSLVHSPYGHVVLSPAVVPFPGWSPYQPPASPLVPSSTPSNVGSAQLYGIGQLTSPASTYYGQYQPSGSSVGPSGSSQKEHSFPERPGQPECQYYMKTGECKFGPSCRYHHPPELVAPKTNVVLSPAGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPIGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSGKESSSSRISSSMSTSTASVGLTLSSGGSISQSTAQQSAQSSSPSAITNNTTSSSISHTSS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00545 484 MobiDBLite consensus disorder prediction 1 42 - -
Accr1g00545 484 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Accr1g00545 484 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Accr1g00545 484 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Accr1g00545 484 PANTHER PROTEIN PHOSPHATASE RELATED 35 413 - -
Accr1g00545 484 MobiDBLite consensus disorder prediction 279 301 - -
Accr1g00545 484 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Accr1g00545 484 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Accr1g00545 484 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Accr1g00545 484 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Accr1g00545 484 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Accr1g00545 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Accr1g00545 484 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Accr1g00545 484 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Accr1g00545 484 MobiDBLite consensus disorder prediction 8 23 - -
Accr1g00545 484 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Accr1g00545 484 MobiDBLite consensus disorder prediction 279 307 - -
Accr1g00545 484 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Accr1g00545 484 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Accr1g00545 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Accr1g00545 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Accr1g00545 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 376 IPR000571 GO:0046872
Accr1g00545 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Accr1g00545 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Accr1g00545 484 Gene3D - 119 168 - -
Accr1g00545 484 Gene3D - 293 379 - -
Accr1g00545 484 Gene3D - 41 118 - -
Accr1g00545 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Accr1g00545 484 MobiDBLite consensus disorder prediction 406 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00545 Accr-Chr1 10344328 10349261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00545 1 443 C2H2 Transcription Factor Family AT5G18550 56.399 1.13e-152 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr1g00545 zf-CCCH 3.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00545 - - qsa:O6P43_003530 654.44