Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00544 ATGGCTTCATCTAGAAAATCCAAAATTTTCACGAAGAGGTATTCAAATATTCATGAAGCTGTATCTAATGAAGATAAAAATACAGAGAATGTTGGCAAGACTAGGTCACAGGGTAGTCCTGGAATTCAGAAGAAGAGAAAATTGGCTGACATGTTAGGACCACAATGGAGAAAGGAGGAGCTAGAGCGTTTCTATGAAGCTTACCGTAAATATGGGAAAGACTGGAAGAAGGTGGCTGCTGCAGTGCATAATAGATCTTTGCAAATGGTAGAAGCTCTGTACTCTATGAATCGAGCATACTTGTCTCTTCCAGAGGGCACTGCTTCTGTGGTTGGACTCATAGCAATGATGACTGATCACTATAGTGTACTGGGAGGAAGTGATAGTGGACAAGAAGCCAATGAAGATACAGAAACATTTCGAAAGCCTCCAAAATTTTTGCGGCAGAAACGTTCAGATGGGAACTATAAAGCATTAGACGGACATTTTTCAGATCATTCTCAGTCACATTCAGTTATATCTGGTGATGGTTGTCTGTCATTGTTGAAGAAGAGTCATTCTGGAATAAGTTCTCATGCTGTTCGGAAAAGAACTCCCCGTGTCCCTGTTTCACATTCCATTCGTAAGGATGTTGGTGAGAAGCATTTTTCACCTGCTAGGCCAGGTTACAGGCCAACGGTTGGCAGTAATGATGTTGCTCATAAGATTGCATTAGCACTGACAGAGGCTTCACAAATAGGTGGCTCTTCCCAGGTTTCAGGCTCACCAAACAATAAATCTAAGGGCATTATGTCATCACCTGGTCAGAATAATGGGAGGAAGAACACTAAATCAGCAGCAGCAGGATCCAAATTTTCCCATTCTGACTTGAATGAGGGTAGCTCTGAAATGAGTTTAGGAAGCAATGGGTGCGTCAGTGGAGATTATTCTCAAAAGCTAGGTCAATGGAGCAGCAGAGAAAGTGCTAGAAGAGGAAAAAATGAAGAAAAGGGAACAAAACACTGCCGAAAAAAGTTAGAACTAAAAGAAAATGTGAATAAACGTTTGGATGGCGTAAAGGAAGCTTCTAGTGGGACAGACGAGGCTGATGGACTGGATTTAATCAAGTATAAAATTGACACTAATTTTGAAGGAACAAAAGGTGCCAGGTCCTCTTTCAAGAGTCTCAGGAAGAAACGCAAAAAAGCACTGCTTGAAAAAAAGGATGAAGTTCCTTCTTTTGATGCTCTGAATGCCTTGGCTGATCTATCTTTGATGATGCCAGACACCAACCCTGACACCGACTCACCTGTTCGAGTGATGGAAGAAAACCAAGGAGTTGTTGATGAGTCTAAAGTGGAAACCGATCATGCAATTCTGAGTGATGAAAGCACTGCTTTAACTAAATTGGGTTTGGTTTCTCCTGATAATGGACTTCTTGCTCCTCAAGAAGAGGGTACCTTCCACCATGATGCTAGAAAGAAGAAAAGAAGACAAACATCTTCAATATTGAAAGGTACTGATGACATGGCAAAGTCTGTTGTTAAAGGCAAGCACCCTTCTGTTTCCACACAACAGTCAAGACAACTGAAGGTGGTACAACCCCCAGGAATGACGTCTTCAAGTAATGATGACAAAGGAGGAGGGGAGGATTCACTGCTATTACCCCTAAAAGTTTCATCTACAGATGAAGTCGGTCTAGCAGACAAAGGAAGGCGAGGACGAAAGATGGAAAAACCAAAGCCAATGGTACAACAAGATATAAAGGTGTCAGAAAAATTTTCTAGTGGTCAACATAGAAAATCTATTCTCCAGAACAGTGTATCATGCCACAAGGAGAAGCTTATTCATTGCCTGTCTTCACATAAAATACGGCTATGGTCCACTTTTGAGTGGTTTTACAGTGCTATAGATTACCCATGGTTTGCAAAAAGGGAGTTCACGGAGTACTTGGAACATGTTGGATTGGGGCATGTTCCTAGACTGACTCGTATTGAGTGGGGAGTCATTAGAAGTTCTCTTGGCAGACCCCGGAGATTTTCTGAGAAATTTTTGATAGAAGAAAAAACAAAGTTAAATCAATACCGGGACTCGGTTAGAGCACATTATGCAGAACTTCTTGCTGGTACCAGGGATGGCCTTCCAACTGATTTGGCCAGGCCTTTAATTGTGGGACAGCGTGTCATTGCTATTCACCCAAAGACGAGGGAGATTCATGATGGGAGTATACTAACTGTTGACAACTGTAGGTGTCGGGTTCAGTTTGACCAGCCTGAACTGGGGGTTGAATTAGTCATGGATATTGACTGCATGCCTCAGAATCCATATGAAAATATGCCAGCTTCTCTGATAAGGCGCAATATGATTCCTGCTAAACTAAATGGAGACCTTATTGAGTTCAAGCTTAACGGGAAACTGAAAGAAGGAAAGATGGAGGAGAACGGAATATTGTCCCCTAGCAGGAACTTAGATCATGTTGATGCTCTTTATATATCCCCCTCAGCTCATGGCATCAACAATTTATTGAAACAGGGCAATTTGACAAGTTCCAAATTGCAAACAAATGTTGCTTGCAATGAGATTGGTAACACTATGCTGTCAGCAAATTCTAAAGCAGTTTTTCATGAAAGTGTCCCATCCAAAGAAGCTGGCATAAATGCTGTTTTTGAGCTGACTCGTGCTCTTGACAAAAAGGAAATTGTGCTGTCTGAACTGAAGCAAATGAATGATGAGGCATCTGAAAGACGGAAATATGGGGACCACTCTTTAAACGATTCAGAGTCATTTAAGAGGCATTATGCTGCAGTATTGTTGCAGTTAAATGAAGGGAACGAGCAGGTCTCTTCTGCCTTGTTTTGCATGAGACAGCATAACGCATATCAGGGGAACTCCTCTAATTTATCCCCAAGGCCCGCAGCTAATTCAGATGATCTTGGTGGTCATGCTAGCTCTTCGTATTGTTCAGCTTCTCACAACCAAAATTGTCAATCTCATATAGCTGAAATTATTGAAAGTTCTAAAAGAAGAGCCTGCACAATGGTTGGTGCAGCTATGCAGGCGATGTCGTCTTTTACTAAGACAGAAGATAAGATTGAAGGAATTGAGGAGGCAATTAATTATATAAATAATCGGCTTTCAGTGGATGACCATGCCGCTCCATCCTCGCAATTCATGCCTACAGACTCTGTTCATGTCACTCTAGTTTCTCAGGATCAGATGATGACTGCAAATAAATCGAATCCTTTGCCAAATAATCATTCACAAGATCCTGAACTAAACAGCTCATCTGATCAAAATGAAGCGAAAATTCCCTCAGAACTTATTTCTCAATGCCTAGCTACATTATTTATGATCCAGAAGTGCACAGAACGACATTTCCCACCTGCCGACGTTGTACACGTGCTAGATTCTGCAGTCACAAGTTTGCAGCCATTTTGTTCAAAGAATCTTCCAATATTTGGGGAGATACAGAAATGCATGGGTATCATCAGGAATCAGATATTGGCGCTCATACCTACCCAAACTACCTAG 3510 0.4162 MASSRKSKIFTKRYSNIHEAVSNEDKNTENVGKTRSQGSPGIQKKRKLADMLGPQWRKEELERFYEAYRKYGKDWKKVAAAVHNRSLQMVEALYSMNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGQEANEDTETFRKPPKFLRQKRSDGNYKALDGHFSDHSQSHSVISGDGCLSLLKKSHSGISSHAVRKRTPRVPVSHSIRKDVGEKHFSPARPGYRPTVGSNDVAHKIALALTEASQIGGSSQVSGSPNNKSKGIMSSPGQNNGRKNTKSAAAGSKFSHSDLNEGSSEMSLGSNGCVSGDYSQKLGQWSSRESARRGKNEEKGTKHCRKKLELKENVNKRLDGVKEASSGTDEADGLDLIKYKIDTNFEGTKGARSSFKSLRKKRKKALLEKKDEVPSFDALNALADLSLMMPDTNPDTDSPVRVMEENQGVVDESKVETDHAILSDESTALTKLGLVSPDNGLLAPQEEGTFHHDARKKKRRQTSSILKGTDDMAKSVVKGKHPSVSTQQSRQLKVVQPPGMTSSSNDDKGGGEDSLLLPLKVSSTDEVGLADKGRRGRKMEKPKPMVQQDIKVSEKFSSGQHRKSILQNSVSCHKEKLIHCLSSHKIRLWSTFEWFYSAIDYPWFAKREFTEYLEHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEKFLIEEKTKLNQYRDSVRAHYAELLAGTRDGLPTDLARPLIVGQRVIAIHPKTREIHDGSILTVDNCRCRVQFDQPELGVELVMDIDCMPQNPYENMPASLIRRNMIPAKLNGDLIEFKLNGKLKEGKMEENGILSPSRNLDHVDALYISPSAHGINNLLKQGNLTSSKLQTNVACNEIGNTMLSANSKAVFHESVPSKEAGINAVFELTRALDKKEIVLSELKQMNDEASERRKYGDHSLNDSESFKRHYAAVLLQLNEGNEQVSSALFCMRQHNAYQGNSSNLSPRPAANSDDLGGHASSSYCSASHNQNCQSHIAEIIESSKRRACTMVGAAMQAMSSFTKTEDKIEGIEEAINYINNRLSVDDHAAPSSQFMPTDSVHVTLVSQDQMMTANKSNPLPNNHSQDPELNSSSDQNEAKIPSELISQCLATLFMIQKCTERHFPPADVVHVLDSAVTSLQPFCSKNLPIFGEIQKCMGIIRNQILALIPTQTT 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00544 1169 MobiDBLite consensus disorder prediction 474 578 - -
Accr1g00544 1169 MobiDBLite consensus disorder prediction 558 578 - -
Accr1g00544 1169 MobiDBLite consensus disorder prediction 319 335 - -
Accr1g00544 1169 MobiDBLite consensus disorder prediction 245 335 - -
Accr1g00544 1169 SMART sant 52 100 IPR001005 -
Accr1g00544 1169 Pfam LIN9 C-terminal 880 950 IPR045831 -
Accr1g00544 1169 SMART DIRP_2 626 727 IPR033471 -
Accr1g00544 1169 Pfam DIRP 625 726 IPR033471 -
Accr1g00544 1169 SUPERFAMILY Homeodomain-like 52 98 IPR009057 -
Accr1g00544 1169 MobiDBLite consensus disorder prediction 955 980 - -
Accr1g00544 1169 MobiDBLite consensus disorder prediction 245 318 - -
Accr1g00544 1169 CDD SANT 56 90 IPR001005 -
Accr1g00544 1169 MobiDBLite consensus disorder prediction 511 540 - -
Accr1g00544 1169 MobiDBLite consensus disorder prediction 19 47 - -
Accr1g00544 1169 MobiDBLite consensus disorder prediction 1068 1093 - -
Accr1g00544 1169 PANTHER LIN-9 1 1168 IPR010561 GO:0006351|GO:0017053
Accr1g00544 1169 Pfam Myb-like DNA-binding domain 55 89 IPR001005 -
Accr1g00544 1169 Gene3D - 2 108 - -
Accr1g00544 1169 Coils Coil 884 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00544 Accr-Chr1 10279611 10294152 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr1g00544 DIRP 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00544 - - pcin:129292382 1872.06