Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00515 ATGTGGCAGAATCATCCGCATAAATCTTCTTCTTCTTCTTCTTCCTGTTTAAGAGATTCTATTCTGGCTCTTGAAGCTGATATTCAACATGCCAATAGCCTGGCAGCATCACTAGCAGCGGGGTATGGAGGGGACCATATTCAGATGAAACTATCATACAGTCCTTTGGCTCCTTTATTCCTTTATTTGATCCAATGGCTGGATTTTACTTGTACCGACTCCCTACCCACCTCTCTTGGCTTATTACACATCCTCATTTTCAAGGTGTACGGTGATGGAATACCATCCTTATCCTCCAAAGAAAGAAAAGCATCTCTCAAGGATTTCTACGGTGTAATATACCCATCACTGAGGCAACTTGAAGGGGAGTTTAAGGCAGATGAAGGTAAAGATAATAGAAATAAATGCAAACAAATTGTGAGTAGAAAAAGCTTCAAGAAAGGGTTTGAGAATGAAGAACAAGATTTAATGAGAGACGATGAATGTGGAATCTGCATGGAGATGAGCATGATCATGGTCCTCCCTGATTGTGGCCACTCTTTGTGCATCACCTGCTTTCATAACTGGAATGTGAGATCAGAATCATGCCCATTTTGCAGGGGAAGCCTGAAGAGATTGAGTCCAAGAGATCTATGGGTTATGATAGACAACAATGAAGTGGTTGATAGACTCACACTCGCAAAAGACAACCTCACACGCCTCTATCTTTACATTGACTCACTCCCTCTTCTTGCTCAACACCACGATGCTCATGTCTTCCTCTTCAACTATATGCTTTAA 780 0.4167 MWQNHPHKSSSSSSSCLRDSILALEADIQHANSLAASLAAGYGGDHIQMKLSYSPLAPLFLYLIQWLDFTCTDSLPTSLGLLHILIFKVYGDGIPSLSSKERKASLKDFYGVIYPSLRQLEGEFKADEGKDNRNKCKQIVSRKSFKKGFENEEQDLMRDDECGICMEMSMIMVLPDCGHSLCITCFHNWNVRSESCPFCRGSLKRLSPRDLWVMIDNNEVVDRLTLAKDNLTRLYLYIDSLPLLAQHHDAHVFLFNYML 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00515 259 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Accr1g00515 259 SUPERFAMILY RING/U-box 152 205 - -
Accr1g00515 259 SMART ring_2 162 199 IPR001841 -
Accr1g00515 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 226 IPR013083 -
Accr1g00515 259 PANTHER RING FINGER PROTEIN 41, 151 17 255 - -
Accr1g00515 259 Pfam Zinc finger, C3HC4 type (RING finger) 159 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00515 Accr-Chr1 9716354 9721434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00515 138 211 C3H Transcription Factor Family AT5G01960 34.667 2.11e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00515 - - pcin:129293983 396.356