Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00485 ATGGATATTGCGGAGGTTGAAGAAAACATGTTCGCAGCAAGTGATGCCAAGTTACATGGAGAGTTATGTAAGGCTCTTTCAGCAACATATTGCAAAGTATTATCAATCTTTCCATCTATGGAAGCAGCTAGGCCCAGGAGCAAATCAGGGATCCAGGCACTGTGTTCATTGCACGTGGCATTAGAGAAGGCCAAGAATGTTCTTCAGCATTGTTCAGAGTGTAGTAAGCTTTATTTGGCTATAACTGGTGATTCTGTTCTTCTAAAATTTGAGAAAGCTAAATGTGCTCTTGAAAATAGTCTTAAAAGGGTGGAAGACATTGTTCCACAATCTATTGGATGTCAGATTGAAGAGATTGTGAGTGAACTTGAAGGTATGGAATTGGCACTTGACCCCGTGGAGAAGCAAATTGGCGATAATTTAATTGCTTTGCTCCAGCAAGGGAGAAAGTTCAGCGACTCTTCCGACAGTAGTGAGCTTGAATGTTTCCACCAGGCAGCTACTAGACTAGGAATCACTTCTTCTAGAGCAGCTCTCACTGAAAGAAGAGCTCTCAAGAAACATATTGAAAGAGCTCGAGCTGAAGATGACAAGCGGAAGGAATCAATTGTTGCCTATCTTTTACACCTTATGAGGAAATACTCTAAGTTATTTAGAAGTGAGTTTTCAGACGATAATGATTCTCAGGGTTCTGCTCCTTGTTCTCCCTCTGTTATGGGCTCCATGGAAGATGGGGTTGCTGGTGGTCATTACCAGGCCTTTGACCGACAGCTCTCAAAACTTAGTTCTTTTAATTTTAAGCCAAATAATAGAAATTTGGGGCAAATTCCCCTTCCGCCTGAGGAGTTAAGGTGTCCAATATCTCTTCAACTTATGTATGATCCTGTTATAATTGCTTCTGGGCAAACTTATGAGAGGGTTTGCATAGAGAAATGGTTCTGTGATGGGCACGACACCTGCCCAAAGACTCAACAGAAACTTGCACATCTATCACTGACCCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGATGGCCCTCCGGAATCTCTTGACTTTAACTACTGGAGATTAGCATTATCTCAGTCTGAATCAACAAATTCAAGATCAATGAACAGTGTCAACTCTTGCAAATTGAAGGGCGTCAAAGTGGTACCTATAGAAGAGACGGGGGTCTCACATGAAGCCGAAGAAAATGCAACTGAAAGTGTGTTTGCACAAGAGGAAAATACTGAGCAGTATTTTAGTTTTCTGAAAGTCTTGACTGAAGGGAACAGTTGGAAAAGGAAATGTAAAGTGGTAGAAAGGTTAAGGCTTTTGCTGAGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCGAATGGATTTGTTGAAGCACTTCTGCAGTTTCTGCAATCAGCAGTGTCCGAAGGGAATGTGACAGCTCAAGAAAGTGGGGCAATGGCCCTCTTTAACCTTGCTGTGAATAACAACAGGAATAAGGAAATCATGTTAGCAGCAGGAGTATTATCATTGCTAGAGGAAATGATCTCTAATTCCTACTCTTATGGCTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGAATGAGTCAGGCTGTCCAGTTCCTCATCCAGCTCCTCTGTCAACCTGACGTTGAAGTCCTGTGCAAGCAAGATTCCCTTCATGCACTGTATAATCTATCCACTGTACCCTCCAATATCCCAAACCTCCTTTCGCCTGGCATCATCAATGGCCTCCAATCCCTCCTTGCAGGCCAGGGTGATTTTATGTCGACGGAAAAATGCATAGCTATTTTGATCAATTTGGCTTCTTCTCAGTTGGGAAGGGAGGAGATGATATCATCTCCAGGGCTCATAGGCTCGCTGGCCTCCATATTGGACACTGTGAATGGTACCTCAAGAGGAAGAGAGAAAGCTCAGAAACTCTTGATGCTGTTCAGACAGCAGCGGCAGCAAGACAATTCACCTCCGAAGACAAATCAGTTCCCGGCCGAAACTAGTGATATAGAGATGCCTCTTCCCGAAACAAAACCGCAATGTAAGTCAATGTCTAGGAAAAAAATGGGGAGGGCTCTTAGCTTTTTATGGAAAACCAAGAGCTATTCTGTTTACCAGTGTTAG 2178 0.432 MDIAEVEENMFAASDAKLHGELCKALSATYCKVLSIFPSMEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALENSLKRVEDIVPQSIGCQIEEIVSELEGMELALDPVEKQIGDNLIALLQQGRKFSDSSDSSELECFHQAATRLGITSSRAALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPSVMGSMEDGVAGGHYQAFDRQLSKLSSFNFKPNNRNLGQIPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFCDGHDTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGVPIPDGPPESLDFNYWRLALSQSESTNSRSMNSVNSCKLKGVKVVPIEETGVSHEAEENATESVFAQEENTEQYFSFLKVLTEGNSWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALLQFLQSAVSEGNVTAQESGAMALFNLAVNNNRNKEIMLAAGVLSLLEEMISNSYSYGCATALYLNLSCLEEAKPMIGMSQAVQFLIQLLCQPDVEVLCKQDSLHALYNLSTVPSNIPNLLSPGIINGLQSLLAGQGDFMSTEKCIAILINLASSQLGREEMISSPGLIGSLASILDTVNGTSRGREKAQKLLMLFRQQRQQDNSPPKTNQFPAETSDIEMPLPETKPQCKSMSRKKMGRALSFLWKTKSYSVYQC 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00485 725 Gene3D - 424 674 IPR011989 -
Accr1g00485 725 PANTHER U BOX DOMAIN-CONTAINING 23 665 - -
Accr1g00485 725 SUPERFAMILY RING/U-box 279 355 - -
Accr1g00485 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Accr1g00485 725 CDD RING-Ubox_PUB 280 332 IPR045210 -
Accr1g00485 725 Coils Coil 175 195 - -
Accr1g00485 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Accr1g00485 725 MobiDBLite consensus disorder prediction 667 701 - -
Accr1g00485 725 SUPERFAMILY ARM repeat 427 662 IPR016024 -
Accr1g00485 725 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Accr1g00485 725 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Accr1g00485 725 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Accr1g00485 725 SMART arm_5 539 581 IPR000225 GO:0005515
Accr1g00485 725 SMART arm_5 454 498 IPR000225 GO:0005515
Accr1g00485 725 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Accr1g00485 725 MobiDBLite consensus disorder prediction 667 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00485 Accr-Chr1 9337778 9341607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00485 1 724 U-box Gene Family AT1G24330 62.131 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00485 - - gmx:100804344 1130.93