Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00455 ATGAGAAGCGATATCCAATTTCTGTTAGGCCTCGCGCTCTTCAGCATTCTCTGCCTTGTTCAAACCAAATCCATCATCGAACCTTGCTCCTCCTCAGACTCCTGCTTCTCGCTTCTCTCCTTCGTCGTCCCCTGGGACTCCAAGCTCTCTGAAATTTCCTCGCGCTTCCAGGTAAATGTCTCCGACATCCTCGCCGCCAACTCCGTCTGGCCGATATCGCAGAAACTCTCCGATCAGATCATCAGATCCAAATCCGTCGTGAAGATCCCAATGCCGTGCCCTTGCGTTGACGGAATCCGAAGATCCATGTCCACAATCTACACCGTGCTAGCATTGGACACACTCGAGACCATATCGGAGGGATTCGGCGGTCTGGTGAGCGCCAACCAGATAGAGACGGTGAACAGCATCAATGCGACGAATCGGCTAACGAACGGAGGGAGATTGGTGATACCGTTGCCGTGTTCATGCTTGAATAATCTGAGGAATGGCGAAACGACAGTCTATATGTCGTATGTGGTGAGAGAGGGAGAGAGCTTGAGGAGTATAGCGTCGGGTTCAAAAACGACAGTCTCTGATTTGGAAGCTGTCAATGGATTGAGTCACAACTCGGTCGAACCAGGAGATATCCTTGCCGTTCCTATTGCAGCATGTTCTTCAGCAGCACTGAATTGGTACAACGAGAGTCTCATTGTCCCCAGTGGCTCATATACTCTTACTGCCTCCAACTGCATCAAATGCTCTTGTAGCCCCATTGATCTCAGGCTACATTGTTATCCATCTACTCTACCAGTTCCCTGCTTCAACTTACAATGCAAAGATTCCAATCTTGTTATTGGAGACCAACATGTCACTTATTTCAATCCTGGCTGTAATGTCACTCAGTGTGTATATCGTGGCCACATAGGTGGTAAGATCCTAAGAAGTGTGTCAAAATCTTCTTATCTCAAGTGCCCAGAAAATGAGACTTATAATGCAGCACCTACTCCATGGCCATCAATAAATTTCAATCCTTCGGTTATGCCACTTGGGGAACTTTCTCCATACACGTCACCTAGTCCTGTTTCTGATGCTTCGATGATGATGCACACCACTCAAGTTTCAATCAACTTGCTCCTACTATTCATTTGGATTTGTTTCCTATGA 1146 0.4729 MRSDIQFLLGLALFSILCLVQTKSIIEPCSSSDSCFSLLSFVVPWDSKLSEISSRFQVNVSDILAANSVWPISQKLSDQIIRSKSVVKIPMPCPCVDGIRRSMSTIYTVLALDTLETISEGFGGLVSANQIETVNSINATNRLTNGGRLVIPLPCSCLNNLRNGETTVYMSYVVREGESLRSIASGSKTTVSDLEAVNGLSHNSVEPGDILAVPIAACSSAALNWYNESLIVPSGSYTLTASNCIKCSCSPIDLRLHCYPSTLPVPCFNLQCKDSNLVIGDQHVTYFNPGCNVTQCVYRGHIGGKILRSVSKSSYLKCPENETYNAAPTPWPSINFNPSVMPLGELSPYTSPSPVSDASMMMHTTQVSINLLLLFIWICFL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00455 381 SUPERFAMILY LysM domain 170 214 IPR036779 -
Accr1g00455 381 SMART LysM_2 106 152 IPR018392 -
Accr1g00455 381 SMART LysM_2 171 214 IPR018392 -
Accr1g00455 381 SMART LysM_2 49 90 IPR018392 -
Accr1g00455 381 ProSiteProfiles LysM domain profile. 105 151 IPR018392 -
Accr1g00455 381 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Accr1g00455 381 Gene3D LysM domain 101 160 IPR036779 -
Accr1g00455 381 Gene3D LysM domain 161 222 IPR036779 -
Accr1g00455 381 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 321 - -
Accr1g00455 381 CDD LysM 171 213 IPR018392 -
Accr1g00455 381 Pfam LysM domain 49 90 IPR018392 -
Accr1g00455 381 Pfam LysM domain 172 214 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00455 Accr-Chr1 8874590 8889340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00455 8 324 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 43.438 6.16e-79 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00455 - - gmx:100819382 432.95