Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00428 ATGATTTCAGGTCGTTGTGCAGCTTGCAAGAGTCAAAGAAGAAAGTGTCCTTCAGATTGCATTTTCTCTCCCTATTTTCCTCCTAATGATCCTCAAAGATTTGCTTGTGTTCATAGAATATATGGTTGCAGCAATGTCGGAAAAATGCTTCAGCAAATGCCAGTGCAAATGAGAGCACAAGCAGTGGATACATTATATATGGAAGCAAGATGGAGGATAGAAGATCCAGTGTATGGTTGTGTTAAGCTTATTTCTCAGTTGCATCAAAACTTAAATGATACAGAAAGTGAATTAGCCAAAGTTAAAGCTCTTATTGCCTTCCACAAGCTCCAAATCTCACAAGTTAATGAACTTCATCAACCCGACTTAGATGCATCACAAAGCAATGTTGAGCAGTTTCAGTTCAATTATTCTACTCAGAATCATTATCCTTGGTTTATTAATTAG 447 0.3714 MISGRCAACKSQRRKCPSDCIFSPYFPPNDPQRFACVHRIYGCSNVGKMLQQMPVQMRAQAVDTLYMEARWRIEDPVYGCVKLISQLHQNLNDTESELAKVKALIAFHKLQISQVNELHQPDLDASQSNVEQFQFNYSTQNHYPWFIN 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00428 148 Coils Coil 84 104 - -
Accr1g00428 148 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Accr1g00428 148 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 127 - -
Accr1g00428 148 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00428 Accr-Chr1 8274235 8274958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00428 1 115 AS2 family AT3G26660 60.000 4.60e-49 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr1g00428 LOB 2.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00428 - - qsu:112008698 184.111