Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00421 ATGGTAAGAGCACCGTGCTGCGAGAAAGTGGGATTGAAGAAAGGAAGATGGACGGCTGAAGAAGATCAGATATTGACACAGTACATCCAACAACATGGTGAAGGATCCTGGAGAAACTTGCCCAAGAATGCTGGATTGTTGAGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTACTTGAGGGCAGATGTGAAGAGAGGAAACATAACTCCTGAGGAAGAAGAAATTATCGTCAAGTTGCATGCTGCTCTCGGCAACAGGTGGTCTGTGATAGCAGGACATTTACCAGGACGGACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTAAGGAGAAAAATCTACTGCTTCATCAAAACCCTAAACGAATCCCTTCCTTTTGTAAACGACATTGCTACTTCCTCCAAACGACGAGGTGGTCGGGTCGGGCCCACTCAACCCTCCACCAAGCCCAACAACCCGACTCCTCCGGCCCAAAATATCCACTCACACAATAACGTAGGCAAGGTGTTTGAGAAAATGTCCAAGCCAATCCTAAACCCACAAACTTGTGCTAATGATGCAGGACCTAATCAAGATGCTGCCATATCGGCTTCTTTATGTTCAAGTGATGATAATCTTGATGAGACCATGGGATCATATCAGTGGCTAGACGATGAGATAAAGAAACTTAGTTACATGTTCGAAAATGGGGTGTTTATGAACGCAAGTGAGGATTATGTGGAACCAGAAAATGAATTAGTGATGAGCAGAAATAATGACATGGTTGGGGGAGATTTGTATGAACTTGTGGGAAAACAAATAATGGGAGCAAGTGATGAGAATGTTATGAGTAGAAACAGTAACGTTAATTCGTCGGAGATTTCGGTCTATGATTATCAGTGGCTTGATTGGGATTACCATCGACAAGATCTTTGTGAAGAAGAGAACCTGAATGTGAACTGTCTGTGGGGTGATGGAAATGGTGGAGAATTTGGTGGAAGTCTGTGTTCATATTAA 1005 0.4299 MVRAPCCEKVGLKKGRWTAEEDQILTQYIQQHGEGSWRNLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAALGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFIKTLNESLPFVNDIATSSKRRGGRVGPTQPSTKPNNPTPPAQNIHSHNNVGKVFEKMSKPILNPQTCANDAGPNQDAAISASLCSSDDNLDETMGSYQWLDDEIKKLSYMFENGVFMNASEDYVEPENELVMSRNNDMVGGDLYELVGKQIMGASDENVMSRNSNVNSSEISVYDYQWLDWDYHRQDLCEEENLNVNCLWGDGNGGEFGGSLCSY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00421 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Accr1g00421 334 CDD SANT 16 61 IPR001005 -
Accr1g00421 334 SMART sant 66 114 IPR001005 -
Accr1g00421 334 SMART sant 13 63 IPR001005 -
Accr1g00421 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Accr1g00421 334 FunFam Myb transcription factor 11 67 - -
Accr1g00421 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr1g00421 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Accr1g00421 334 Gene3D - 13 66 - -
Accr1g00421 334 Gene3D - 71 116 - -
Accr1g00421 334 FunFam Myb transcription factor 71 116 - -
Accr1g00421 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr1g00421 334 CDD SANT 71 112 IPR001005 -
Accr1g00421 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr1g00421 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Accr1g00421 334 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 189 - -
Accr1g00421 334 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00421 Accr-Chr1 8145495 8149400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00421 1 313 MYB Transcription Factor Family AT5G49330 41.547 8.98e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr1g00421 Myb_DNA-binding 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00421 K09422 - gmx:100805532 330.102