Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00420 ATGGTAAGAGCACCGTGCTGCGAGAAAGTGGGATTGAAGAAAGGAAGATGGACGGCTGAAGAAGATCAGATATTGACACAGTACATCCAACAACATGGTGAAGGATCCTGGAGAAACTTGCCCAAGAATGCTGGATTGTTGAGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTACTTGAGGGCAGATGTGAAGAGAGGAAACATAACTCCTGAGGAAGAAGAAATTATCGTCAAGTTGCATGCTGCTCTCGGCAACAGGTGGTCTGTGATAGCAGGACATTTACCAGGACGGACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTAAGGAGAAAAATCTACTGCTTCATCAAAACCCTAAACGAATCCCTTCCTTTTGTAAACGACATTGCTACTTCCTCCAAACGACGAGGTGGTCGGGTCGGGCCCACTCAACCCTCCACCAAGCCCAACAACCCGACTCCTCCGGCCCAAAATATCCACTCACACAATAACGTAGGCAAGGTGTTTGAGAAAATGTCCAAGCCAATCCTAAACCCACAAACTTGTGCTAATGATGCAGGACCTAATCAAGATGCTGCCATATCGGCTTCTTTATGTTCAAGTGATGATAATCTTGATGAGACCATGGGATCATATCAGTGGCTAGACGATGAGATAAAGAAACTTAGTTACATGTTCGAAAATGGGGTGTTTATGAACGCAAGTGAGGATTATGTGGAACCAGAAAATGAATTAGTGATGAGCAGAAATAATGACATGGTTGGGGGAGATTTGTATGAACTTGTGGGAAAACAAATAATGGGAGCAAGTGATGAGAATGTTATGAGTAGAAACAGTAACGTTAATTCGTCGGAGATTTCGGTCTATGATTATCAGTGGCTTGATTGGGATTACCATCGACAAGATCTTTGTGAAGAAGAGAACCTGAATGTGAACTGTCTGTGGGGTGATGGAAATGGTGGAGAATTTGGTGGAAATGTTGTTCAAGTCATTCGTTTTAGTCAAGACAAATAA 1026 0.4269 MVRAPCCEKVGLKKGRWTAEEDQILTQYIQQHGEGSWRNLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAALGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFIKTLNESLPFVNDIATSSKRRGGRVGPTQPSTKPNNPTPPAQNIHSHNNVGKVFEKMSKPILNPQTCANDAGPNQDAAISASLCSSDDNLDETMGSYQWLDDEIKKLSYMFENGVFMNASEDYVEPENELVMSRNNDMVGGDLYELVGKQIMGASDENVMSRNSNVNSSEISVYDYQWLDWDYHRQDLCEEENLNVNCLWGDGNGGEFGGNVVQVIRFSQDK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00420 341 CDD SANT 16 61 IPR001005 -
Accr1g00420 341 SMART sant 66 114 IPR001005 -
Accr1g00420 341 SMART sant 13 63 IPR001005 -
Accr1g00420 341 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 189 - -
Accr1g00420 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Accr1g00420 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Accr1g00420 341 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr1g00420 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Accr1g00420 341 Gene3D - 71 116 - -
Accr1g00420 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr1g00420 341 CDD SANT 71 112 IPR001005 -
Accr1g00420 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr1g00420 341 FunFam Myb transcription factor 11 67 - -
Accr1g00420 341 Gene3D - 13 66 - -
Accr1g00420 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Accr1g00420 341 FunFam Myb transcription factor 71 116 - -
Accr1g00420 341 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00420 Accr-Chr1 8145332 8149400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00420 1 313 MYB Transcription Factor Family AT5G49330 41.547 5.47e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr1g00420 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00420 K09422 - gmx:100805532 328.176