Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00419 ATGAGTGCCTCAGAAAACCCTAACTCTAATAAGTGCGAGACGAGAAAATCTTCATCATCATCTTCTTCTTCAACTAATCTGAAGCTATTTGGTTTCCCATTAAGTGCAAGTGCTCGTGGTGCTTTCATTTCCTCATCAAACCATAAGAGATCATTCAAATGCCATTTCTGTCGGAAAGAATTCTCTAATTCTCAAGCTCTTGGAGGCCACCAAAATGCTCATAAAAAAGAACGTCGGCAAGCTACCTTAGCTCATTTCGACAACCTTAGCGTTCATTTTCTTCCTCATCGTCAACGCCTCGAGATCACTTCATCATCTCCAGCACCATCAGGACCGTACACGACGACCAACCTTGTTCTTCATCATCAACCTTTTTGGTCCGAGCCGGAGCTTTGGAATGGAGTTCGACCCGACGACAGAGGGGCACGTGATGATGCTGAGAAAGAGCTCTCGAGTGATGAAGGATCAGTACGAAATGGTGATGATGGTGTTGATCTTAACTTGAGTTTATAG 513 0.4405 MSASENPNSNKCETRKSSSSSSSSTNLKLFGFPLSASARGAFISSSNHKRSFKCHFCRKEFSNSQALGGHQNAHKKERRQATLAHFDNLSVHFLPHRQRLEITSSSPAPSGPYTTTNLVLHHQPFWSEPELWNGVRPDDRGARDDAEKELSSDEGSVRNGDDGVDLNLSL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00419 170 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Accr1g00419 170 MobiDBLite consensus disorder prediction 133 160 - -
Accr1g00419 170 MobiDBLite consensus disorder prediction 1 26 - -
Accr1g00419 170 PANTHER ZINC FINGER PROTEIN 5 15 170 IPR044299 GO:0010090
Accr1g00419 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Accr1g00419 170 Gene3D Classic Zinc Finger 39 91 - -
Accr1g00419 170 SUPERFAMILY beta-beta-alpha zinc fingers 49 79 IPR036236 -
Accr1g00419 170 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00419 Accr-Chr1 8118921 8119433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00419 27 105 C2H2 Transcription Factor Family AT5G06650 38.889 1.46e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g00419 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00419 - - pcin:129293840 224.172