Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr1g00414 | ATGAATCTGAGCAACGGCAAGGGATCTATGTCAACGGTTAGCTCTCCTGCGGTTTCCAAGTCCGGTGACATCGTCTCCGACCAGTTTCCGGCGGGTCTTCGGGTACTGCTGGTGGATGATGATCCCACGTGCCTTATGATACTTGAAAAGATGCTTCGCACTTGCCTCTACGAAGTCACGAAATGCAATCGAGCAGAGATTGCGCTTACATATCTGAGAGAGAACAAAAATGGGTACGACATTGTTATAAGCGATGTACATATGCCAGACATGGATGGCTTCAAACTCTTGGAGCACATTGGGTTAGAGATGGACCTTCCCGTCATCATGATGTCTGCCGATGATGGAAAGAATGTTGTTATGAAAGGTGTGACTCACGGTGCTTGTGATTACCTTATCAAACCTGTGCGCATCGAGGCTCTAAAGAATATATGGCAACATGTGATTCGTAAGAGAAAGAATGAATGGAAGGATTTGGAGCAGTCAGGTAGTGCAGAAGAAGGAGATCAGAAACAAAGGCCAACTGATGAGGTGGATTACTCATCCTCTGCAAACGAAGGCAATTGGAGAAATGCAAAGAAGAGGAGGGATGAGGATGAAGAAGCAGAGGAAAGGGATGACTCATCCACGTTAAAGAAGCCACGAGTTGTTTGGTCGGTTGAGCTCCATCAACAGTTTGTCGCTGCTGTGAATCAGCTTGGAATTGATAAGGCAGTTCCTAAAAAAATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGCTTGTATCTTCGAAGGTTGAGTGGAGTTTCTCAACATCAGGGTAACCTGAATAACTCTTTCATCAGCTCACAAGAGGCAACTTTTGGGGCAATTTCTTCACTCAGTGGAACGGATCTCCAAACTTTTGCTGCTGCAGGTCAGCTTCCACCACAGAGTCTAGCAACACTTCAAGCAGCAGGACTGGGTAGATCAACTGCAAAAACTGGCATGCCCATGCCCCTTGTGGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGATTAAGATTCGGAGAAGGACAACAGCAATATGGGAGCAGTAGTAAACCAATGAACTTACTTCATGGTATCCCTACCAACATGGAGCCAAAGCAGCTTGCTTCTCTGCACCAATCTACTCAACCCCTAGGGAGCTTGAATATGCGAGTCAATGCTTCTCCTTCCCAGAGCAACCCCTTATTAATGCAGATATCTCAATCACAACCCAGGGGTCATATGCTTAATGAACTTAATGTGCCTCATGTTCCCAGGCTTCCAACATCTATGGGGCAGTCTCCAGTATCAAATGGGTCTCCCGGTAGTGCTCTGGGAAGAAATGGTATTTCTGATAATAGCAGAGGAGCTGCATATAGTTCAGTTCCGCAAACCTCTTCAATGTTGAACTTTCCCTTGAGCCAAACCACAGAAATGCCTGCAAGTAGTTTTCCTCTTAGAAACACTCCAGATATGTCAAGTATCACATCAAAAGGAGTTTACCAAGATGGAGGTTCTTCAGGAATGAAAGGGTCTTCTGGATTTGTTCTAAGTTATGATATCTTTAATGAACTGCACCAGCATAAGTCCCGTGAATGGGAAGTACAAAACATGGGCCAGAACCCGTCATATGATGCCTCTCAGAATGCAAATCCCTTACAAGGCAACATTGATGTCTCACCATCAGTTCTAGTCCATCAAGGTTTCTCTTCCAACCAACATCAGATGGGACAGAATAGAGATGCTGCTTCGGTTGGAAAAGCTATGTTCTCCCTGGGGGAAGGCATGCAGTCAGCTAATTTCCAGAATATTGGTCAACATCAGGGTTTCCAAAATACGCTTCTTACTGACAATTCAGTAAGGGTTAAGGCTGAAAGAATTCCTGATGCTAACTCTCAGACGAACCTCTTCCCTGAGAACTATGGGCAGGAAGATCTCATGAGCGCACTTCTGAAACAGCAAGAAGGCATGGGACCAGCCGAGAATGAGTTTGATTTTGATGGATATTCCATTGACAACATCCCTGTCTAG | 2058 | 0.4504 | MNLSNGKGSMSTVSSPAVSKSGDIVSDQFPAGLRVLLVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALTYLRENKNGYDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNEWKDLEQSGSAEEGDQKQRPTDEVDYSSSANEGNWRNAKKRRDEDEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNLNNSFISSQEATFGAISSLSGTDLQTFAAAGQLPPQSLATLQAAGLGRSTAKTGMPMPLVDQRNLFSFENPRLRFGEGQQQYGSSSKPMNLLHGIPTNMEPKQLASLHQSTQPLGSLNMRVNASPSQSNPLLMQISQSQPRGHMLNELNVPHVPRLPTSMGQSPVSNGSPGSALGRNGISDNSRGAAYSSVPQTSSMLNFPLSQTTEMPASSFPLRNTPDMSSITSKGVYQDGGSSGMKGSSGFVLSYDIFNELHQHKSREWEVQNMGQNPSYDASQNANPLQGNIDVSPSVLVHQGFSSNQHQMGQNRDAASVGKAMFSLGEGMQSANFQNIGQHQGFQNTLLTDNSVRVKAERIPDANSQTNLFPENYGQEDLMSALLKQQEGMGPAENEFDFDGYSIDNIPV | 685 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr1g00414 | 685 | FunFam | Two-component response regulator | 209 | 272 | - | - | |
Accr1g00414 | 685 | MobiDBLite | consensus disorder prediction | 156 | 176 | - | - | |
Accr1g00414 | 685 | SUPERFAMILY | Homeodomain-like | 210 | 270 | IPR009057 | - | |
Accr1g00414 | 685 | SMART | REC_2 | 33 | 145 | IPR001789 | GO:0000160 | |
Accr1g00414 | 685 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 33 | 386 | IPR045279 | GO:0009736 | |
Accr1g00414 | 685 | PIRSF | RR_ARR_type-B | 9 | 677 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Accr1g00414 | 685 | Gene3D | - | 33 | 170 | - | - | |
Accr1g00414 | 685 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 213 | 266 | IPR006447 | GO:0003677 | |
Accr1g00414 | 685 | CDD | REC_typeB_ARR-like | 35 | 149 | - | - | |
Accr1g00414 | 685 | Gene3D | - | 210 | 272 | - | - | |
Accr1g00414 | 685 | MobiDBLite | consensus disorder prediction | 189 | 210 | - | - | |
Accr1g00414 | 685 | ProSiteProfiles | Response regulatory domain profile. | 34 | 149 | IPR001789 | GO:0000160 | |
Accr1g00414 | 685 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 212 | 269 | IPR017930 | - | |
Accr1g00414 | 685 | Pfam | Response regulator receiver domain | 35 | 143 | IPR001789 | GO:0000160 | |
Accr1g00414 | 685 | MobiDBLite | consensus disorder prediction | 156 | 210 | - | - | |
Accr1g00414 | 685 | FunFam | Two-component response regulator | 33 | 170 | - | - | |
Accr1g00414 | 685 | SUPERFAMILY | CheY-like | 32 | 156 | IPR011006 | - | |
Accr1g00414 | 685 | Pfam | Myb-like DNA-binding domain | 215 | 265 | IPR001005 | - | |
Accr1g00414 | 685 | MobiDBLite | consensus disorder prediction | 440 | 470 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr1g00414 | Accr-Chr1 | 7918576 | 7921901 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr1g00414 | 67 | 685 | Response Regulator Gene Family | AT3G16857 | 48.869 | 1.47e-173 | 508 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Accr1g00414 | Response_reg | 1.5e-22 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr1g00414 | - | K14491 | gmx:100814930 | 1066.99 |