Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00413 ATGGGAGTAAAGGGTCTCTGGGAACTTCTCGCCCCCGTAGGTCGTCGGGTCTCCGTCGAGACCCTTGCCGGGAAAAAGCTCGCCATTGATGCGAGCATATGGATGGTTCAGTTTATGAAGGCTATGCGGGATGAGAAGGGAGAAATGGTTCGCAATGCTCATTTGCTCGGTTTCTTTCGCCGAATTTGCAAGCTTTTGTTCCTCCGGACTAAGCCTGTTTTTGTCTTTGATGGCGGCACGCCCGTTCTCAAGCGACGGACTGTGATTGCGCGTCGGAGGCAGCGCGAAAATGCTCAGGCCAAAGTTCGAAAGACTGCCGAGAAATTGCTTCTCAATCATTTAAAGGCATTGAAGTTGAAAAAACTTTCAGATGATGTAAAAAACCAGAGGTTGCAGCAGAATGGTGATGCTAAGGGTCAGAAAAAATCAGATCAGGTGGGCTTAATTGGCTGTGATTTAGGAAGAAACAATGAAAAAGAGCAAGATAAAACATGTGGAGCTGAAGTGGACAAGAATATATCCAAGGCTACTGTATCAACAAGTTGCAATCAGGAGGATCTTGATGCATTGTTGGCAGCGTCTATTGTTGCAGAGGAAGATGAATTATTAGCTGGTAAAGCACCATATAGTGCAGTCAGTCTCTCTGAGGAGGAAGATGATACAGATCCAGAAATAATATTGCCAGAGTTAGGTGCTGAAGTTGATCTGTCTGTGTTAGCTGCTTTACCACAGTCGATGCAATTTGATATTCTCTCTCAGCTTAAAGGGAAAAAGGTAGAAGGACCACTGAAGGATTCTAACAACCAGAAACAATTTGAGGTCAGTGAAAAGGACAGGGGCAAGGGTAAGGGAATTCTGTTGCATGAAGACGACACAGTAGGATGTAGGTCAAGCAGTGAGGATATGGTGGCAAAGAAATACAATCAGGACAAAGTGGATGAAATGTTGGTTGCATCTATTTTGGCTGAGGAAAATGAAAAGTTAGTAAACAATGTATCAACATCTGGTGGGCCTTTCATCTGTGAGGAAGAGGATTTCATTAATGATGAAGACGAAGAAATGATCTTGCCAGCAATGCATGGTAAGGTTGATCCAGCTGTTCTAGCCTCTTTGCCTCCATCAATGCAACTTGACCTTCTTGGTCAGATGAGAGAGCGACTGATCGCAGAGAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCCGCAAAATTCTCTGAATTACAAATACAGGCTTACCTTAAAACTGTTGCTTTTCGTCGGGAGATAAATGAAGTGCAGAAAGTTGCTGCAGGGGGGGTGGTAGGTGGTGTGCAGACTTCTCGTATTGCATCTGAAGCCAACAGAGAGTATATATTTTCAAGATCTTTTACTGGTGATAAACAAGAACTTACTTCTACCAGCTTAGAGAAAAATAAAAACACACATCAGAAGACTCCAGGAAACCATTTTTCTCAGGGTTTTGTGAATAACAGTGATCCTGCCAATGATTCTAGTACCTCAAGTGGGTTGGGTCGCGATGAAGCTGGAAGTCCATCTGATGAGAATATCCAAACTTATCTGGATGAGAGGGGCCAATTTCGTGTTAGTAGACTTAGAGCTATGGGGATGCGTATGACCCGTGACATACAGCGAAATTTGGATCTGATCAAGGAGATTGAGCAGGAAAGAACAGTTGTGAATAAGGCAGCAAATAATAATGCAATGCTTAGTGGGGACAAAAATGTTCCTTCGAAAGCTTCTAGCAACCTGCTTGTTGATACATCCGATGGATCAAATGTTGACTTAGCTGGAGATAATTCTAGAAATGAACACCTTGCATTAGCAGGGGATGCTTCTTTGGAGATATCTTTCATGGATGATGATGCTAACAAGTGCCTTAATGATGATAATGATGATTTATTTGCTAGTTTAGTAGCAGGTAATTCAGTAGCATTTTCTACTGCTGACAAGAACTCATTGAAAGAACAAGTTTCTGATTCTAGTTCTGATTGTGACTGGGAAGAAGGAATTGTTGAAGGTAAAAGTGGTGTTCATGTGAAAATAAAATCACCTGCTTCAAAAGATAATTATAATGATGAGTCTGATGTAGAATGGGAGGATGGAGTTTGTGATGATGCCAACACAACAGTGAGTGCAGCTGAGGCACAGAAAAAAACATCTCGAGGTTGCTTGGAGGAGGAGGCTGACTTACAGGAGGCAATACGGAGAAGCCTGGAGGTAATGGGGGACTGCAAACTTAATGGCGCATCATCCAGTCATGAGTACTCAAATGCTGATGGGGATAGATCAGATTATGCATTAAACCAAGATGATAATTTGGTTGATTCTGGAGTGAAGAGTATTTATGGAAATTTTAGAGCACCGGAGAGAGACGCTGGAATGGGTGAGTCCACCTTACATAGGGAAGGTAACACTGAACACAGAGAATCAAATTATAAACTTATAGATGATAAGATGGATGGCACAGTGAGAAGTAATAAACAAGTTTCCCAGTCTCCTGAGGGACTGTCAGAGTCATCTGTGGCGTTTGATTCTGAGAAGACAGTGTCATTTATTAAGAAGCCTCATTCAATGGAGATAGGATCACATTCTGAAGATTTGTTGCCCACTGCAGATGAAAGTAGGAGGGATGAGATTCACATGGCTGCACAGCAACTCTTGGGTACCTTAAATGAGGATGGCAAGGTGTTTGCCAATGGTAACAAATCTCCTGTAGCTGACTACCTTGGTTCTTCAAAAGAGGAGAAAAAGAACTGCAGTTATGAAGCTCAACCTTTTGGTAATTATTCTGAGAAGCCTGAGCCTGTTGCTCCCTTTGTGGATTCCTCCTCAGAACGATTAACAGAAGACCTTGACACTCAGCCAGAGTTTCCTAAAGAGAATTGTGGAAGCTTTGAGAAAAGGAAGAGTGACCTTGGTAAAGATGCAATGGAGCCCCCAGGGCCTTTGTCTGCCAAAGACCTTGAAACTTGGTCAGAGTTGGCTGGAGAGGATAACCATGGAAGCTTTGAGGAAAGCAAAAATAACCTTGTCGAAGATGCAATGGATACCCCAGCTCACTTGTTTGCAGACGAAATCAAGCATGGTTTGGAGGAAGAAATCCGAATTCTTGGTCAAGAATATACCAGCCTAGCATATGAGCAGAGGAAGCTTGAACGCAATGCCGAATCTGTCAACAGTGAATTATTTACTGAATGTCAGGAACTATTGCAAATGTTTGGCTTGCCATATATTATCGCTCCAATGGAAGCAGAAGCACAATGTGCGTATTTGGAACTTGCAAAACTGGTGGATGGTGTTGTGACTGATGACTCTGATGTCTTTTTATTTGGGGCACGTAGTGTCTACAAGAATATATTTGATGATCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGATTGACCAGAGAAAAATTAATCCGCATGGCTTTGCTTCTGGGGAGTGATTATACTGAAGGTGTCAGTGGAATTGGAATTGTAAATGCTATTGAGGTCGTAAATGCATTCCCTGAGGAAGATGGCCTTCTGAAATTCCGGCAGTGGGTCGAGTCACCCGATCCTACCATCTTTGGAATGCTTGAGACAAAAAGTGGATCCAGTACCCGAAAGAAAGGTTCAAAAGTTGAAGAAAATCTTCCTGGCAAAAATTGCAATATAGAAGAGACTGTGATGGATCAAAACGTTTCCCATGCTCAGGAACATGACTCATCAGATGACATCCAAGAAACTAAGCAGAATTTTATGAATAAACATAGAAATGTAAGCAAGAATTGGAACATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCCTACTCCTGTCCACAAGTGGACAAGTCAACTGATCCATTTGCCTGGGGAAAGCCAGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAGTTTGGCTGGACTAGTCAGAAAGCAGATGAGTTGCTTTTACCTGTTTTAAAGGAATACAACAAAAATGAGACTCAATTGCGGTTAGAAGCATTTTATACTTTCAATGAAAGATTTGCAAAAATTCGCAGCAAGAGAATTAAGAAAGCAGTGAAAGGAATCACTGGCGATCACCCTTCAGAGTTTACAGATGAGCCTGCAGAGGACTTGTCTAAGAGTAGGAAGAATGAGACAGGAATTCCTGCTGAACTTGGGATTAGCAAATCAGAGACTTTTAAGGGAACAGGAGAAAGCCCTGCTGACATGAAGCCATTAAATTTAAAACAGTCAAGGAAAAGGAAGAATTCTGGAGATACTGTTGCTAAGACACAGTCAAGGAAAAAGGGTAAATTGAATGCTCCTGTGTCGGCTTCAGGTCTGCCTGAGGTAGATGTGCAGACAGGAGCAGAGCAAGCTCAGCCAAGTGATGATAATGGTTTGAGTCGGAATAGAAATAATAAAGGCAGGGCAAAAGGTGTAAGAGTTCCAAGAGGAAGGGGGAAGAGAAGTCTTGGTGCTGATTCACGTAAAACTACATCTAGTGATAGTGAAAGCGATGACCATGAGCCTGAAGTACATGGTATAAACTCAAGAAGCACTGAAGGGGTCCGAAGGTCTCTACGATCTCGGAAGAGTGTCAACTATGCCATGGACAACATTGAAACCGAAGATACTGTTGCCTCATCTGATCAGAGCAATAAGACAGACTTGAATAGAGAGCAGACAGATGAAATATTTTCTGGGCTGCATGGTTTTTGCGGCAATGATGAGTCTGATTTCAGCAGACACAAGGAAAGCACAATAAATCTTTCTCCTAAGAAAGATTTGCCCAGAAGCTATCTTGAATCTGGAGGGGGTTTCTGTACTGATGAAGAAAAAACAAGTCACGCAGGAGCGAGCAATTGTGATAGCTCTCATGATGCCGACTACCTCAAAGTGGGAGGTGGATTTTGCCTAGATGACAATGAGACCGGTAACAAACATAATGAAATTCATGACGATGATGATGAAGACTACCTTAGAGTGGGAGGTGGATTTTGCCTAGATGATGAGACTGGTAGCAAACATAATGAAATTCATGACGATTCGGCAACTATAGTGGATGATAGTGCAGAGCTCACTCGTAGTTGTTCTGGTTTTGTGGATGAAGCTGAATGTGGTAAAAATATTACTAATGAATCAAGTTCTGTCAATAAAACATCTGGAATTGAACTGCAAGATAGAGGGAACACTAAACTAAAGAGTGTGATGAATCATGACTCTGTGAATGCTAGAAGTAATTATAATCAGCTCGAGTCTGACACGGGGGTTTGGATATCAGAGAATGCCCAAGGCGATACTGAGAACGCCGCAGCAGCATTTAGTGCCATGCCTTTTCTTAGGAAGAAAAGGAGGAAGAGCTGA 5367 0.4231 MGVKGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPVLKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALKLKKLSDDVKNQRLQQNGDAKGQKKSDQVGLIGCDLGRNNEKEQDKTCGAEVDKNISKATVSTSCNQEDLDALLAASIVAEEDELLAGKAPYSAVSLSEEEDDTDPEIILPELGAEVDLSVLAALPQSMQFDILSQLKGKKVEGPLKDSNNQKQFEVSEKDRGKGKGILLHEDDTVGCRSSSEDMVAKKYNQDKVDEMLVASILAEENEKLVNNVSTSGGPFICEEEDFINDEDEEMILPAMHGKVDPAVLASLPPSMQLDLLGQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKVAAGGVVGGVQTSRIASEANREYIFSRSFTGDKQELTSTSLEKNKNTHQKTPGNHFSQGFVNNSDPANDSSTSSGLGRDEAGSPSDENIQTYLDERGQFRVSRLRAMGMRMTRDIQRNLDLIKEIEQERTVVNKAANNNAMLSGDKNVPSKASSNLLVDTSDGSNVDLAGDNSRNEHLALAGDASLEISFMDDDANKCLNDDNDDLFASLVAGNSVAFSTADKNSLKEQVSDSSSDCDWEEGIVEGKSGVHVKIKSPASKDNYNDESDVEWEDGVCDDANTTVSAAEAQKKTSRGCLEEEADLQEAIRRSLEVMGDCKLNGASSSHEYSNADGDRSDYALNQDDNLVDSGVKSIYGNFRAPERDAGMGESTLHREGNTEHRESNYKLIDDKMDGTVRSNKQVSQSPEGLSESSVAFDSEKTVSFIKKPHSMEIGSHSEDLLPTADESRRDEIHMAAQQLLGTLNEDGKVFANGNKSPVADYLGSSKEEKKNCSYEAQPFGNYSEKPEPVAPFVDSSSERLTEDLDTQPEFPKENCGSFEKRKSDLGKDAMEPPGPLSAKDLETWSELAGEDNHGSFEESKNNLVEDAMDTPAHLFADEIKHGLEEEIRILGQEYTSLAYEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTIFGMLETKSGSSTRKKGSKVEENLPGKNCNIEETVMDQNVSHAQEHDSSDDIQETKQNFMNKHRNVSKNWNIPSSFPSETVISAYSCPQVDKSTDPFAWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKNETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGDHPSEFTDEPAEDLSKSRKNETGIPAELGISKSETFKGTGESPADMKPLNLKQSRKRKNSGDTVAKTQSRKKGKLNAPVSASGLPEVDVQTGAEQAQPSDDNGLSRNRNNKGRAKGVRVPRGRGKRSLGADSRKTTSSDSESDDHEPEVHGINSRSTEGVRRSLRSRKSVNYAMDNIETEDTVASSDQSNKTDLNREQTDEIFSGLHGFCGNDESDFSRHKESTINLSPKKDLPRSYLESGGGFCTDEEKTSHAGASNCDSSHDADYLKVGGGFCLDDNETGNKHNEIHDDDDEDYLRVGGGFCLDDETGSKHNEIHDDSATIVDDSAELTRSCSGFVDEAECGKNITNESSSVNKTSGIELQDRGNTKLKSVMNHDSVNARSNYNQLESDTGVWISENAQGDTENAAAAFSAMPFLRKKRRKS 1788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00413 1788 CDD PIN_XPG_RAD2 1058 1142 - -
Accr1g00413 1788 FunFam DNA repair protein UVH3 1 147 - -
Accr1g00413 1788 Pfam XPG I-region 1075 1156 IPR006086 GO:0004518
Accr1g00413 1788 MobiDBLite consensus disorder prediction 1414 1433 - -
Accr1g00413 1788 Gene3D - 1 139 - -
Accr1g00413 1788 MobiDBLite consensus disorder prediction 925 944 - -
Accr1g00413 1788 Gene3D - 1023 1140 - -
Accr1g00413 1788 SMART xpgn3 1 98 IPR006085 GO:0004518
Accr1g00413 1788 SUPERFAMILY PIN domain-like 2 1156 IPR029060 -
Accr1g00413 1788 MobiDBLite consensus disorder prediction 463 520 - -
Accr1g00413 1788 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 255 - -
Accr1g00413 1788 Gene3D - 1141 1196 - -
Accr1g00413 1788 Pfam Ubiquitin binding region 231 253 IPR025527 -
Accr1g00413 1788 Pfam Ubiquitin binding region 363 387 IPR025527 -
Accr1g00413 1788 MobiDBLite consensus disorder prediction 1488 1516 - -
Accr1g00413 1788 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1141 1349 IPR036279 -
Accr1g00413 1788 CDD PIN_XPG_RAD2 2 92 - -
Accr1g00413 1788 ProSitePatterns XPG protein signature 2. 1075 1089 IPR019974 GO:0016788
Accr1g00413 1788 MobiDBLite consensus disorder prediction 1199 1220 - -
Accr1g00413 1788 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Accr1g00413 1788 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Accr1g00413 1788 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Accr1g00413 1788 MobiDBLite consensus disorder prediction 952 987 - -
Accr1g00413 1788 MobiDBLite consensus disorder prediction 1533 1556 - -
Accr1g00413 1788 FunFam DNA repair protein UVH3 1021 1140 - -
Accr1g00413 1788 FunFam DNA repair protein UVH3 1141 1198 - -
Accr1g00413 1788 SMART xpgineu 1072 1141 IPR006086 GO:0004518
Accr1g00413 1788 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Accr1g00413 1788 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 173 193 IPR006084 -
Accr1g00413 1788 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Accr1g00413 1788 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Accr1g00413 1788 SMART HhH_4 1143 1176 IPR008918 GO:0003677|GO:0003824
Accr1g00413 1788 MobiDBLite consensus disorder prediction 1361 1384 - -
Accr1g00413 1788 MobiDBLite consensus disorder prediction 789 809 - -
Accr1g00413 1788 MobiDBLite consensus disorder prediction 794 809 - -
Accr1g00413 1788 CDD H3TH_XPG 1144 1287 - -
Accr1g00413 1788 MobiDBLite consensus disorder prediction 952 976 - -
Accr1g00413 1788 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Accr1g00413 1788 MobiDBLite consensus disorder prediction 1361 1562 - -
Accr1g00413 1788 MobiDBLite consensus disorder prediction 463 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00413 Accr-Chr1 7877406 7889347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00413 1066 1173 Core DNA Replication Machinery Family AT5G26680 36.036 2.11e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00413 K10846 - gmx:100820295 1716.44