Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00401 ATGAATTCGAATTATGGCAAACCCAATAATCAAACGAGTGCTTCGTCTGCCTCACTGAAGAACATCAAGTTCGACTTTGATCTTGGGATCGGATCCAATCAACCAAAATCTCTGAACGATCAGAAAAACCCAAAATCGTCCCATCCATATTCTTCTTCCTCATCTTCATATTCATCTGCGCAACCCAGACCCTCGTGGCAACCCAACAAGCCATCATGGACTCACCAGCCTGCACCGAATATGGCGAACCAGTCTGGATTGCCGGGTGGACCCACTTCAATGGTGGGAGATATCTTTGGCAAGAGTTGGGGGTCTACTCAACCTTCGGGTTCTACTTCGACCATTGGAGTTGTTAATAAAAACCCTAATCTCTTTGGAGATTTGGTGAGCTCTGCATTGGGACAGAGTTCTAATAGTAGCAGTAATACTCCTATAAATTCGATTCCTGTTTCTAAGGCGTCAAGTACTACATCGAACAAGAGCTCCTTTTCGATGGGAAATATGGCGGATGCTTTGCCTAAAACTAGCAACACGACGACGAGTAGTGGAAGTTGGGGATCTTCCGGGTACAATAATACTAGTATGGGCGCTAATAAAACCCCAAATCTTGGTGGTCCTTCAATGCAAAGTATGAATAGTGGTAGTTCAGCTGGAAGTGCAATGAATGTTAATAGAGATCCATTCAGCTCTTTGGCTGGATTTGGATCAAAACCATCTGGTAGTCTTAATTCAGCTGGAATGGCCGCAAGAAATAATAAAGCAGAGGATGATGGTTTTGGGGATTTCCAGAAAGCTTCCAAACCAGCCTTTCCAACATTCCCATCAAGCACTTCTACTGCAGATAATACCAGTTTTCCAGGATTTACCAATGTGAATCAGAACCCTATGCAGACATCTGCTGGTGGTGACCCTATAGACATGTTGTTCTCATCTTCATCAGCTTCTGCTGGAAGTGCTCATGTGACTTCCGAAGGATTTGGAGGAAAATCATCTTCTAACATTGATGATTGGGGTTTGGATTCTGAATTTGGTGGAGGAGGACATGATGATGGTGTTACAACCACGGAGCTTGAAGGGCTTCCACCTCCTCCTTCTGGGCTATCTGGTTCTACGGCAAAAGGTAAAGGGATGGACAATTACAAGCAAGGGCAATTTGCAGATGCTATTAAGTGGCTATCTTGGGCTGCCATCCTTCTTGAGAAAACAGAGGATAATGCTGGTATGACAGAGGTGTTGTCATGCAGAGCCTCATGTTACAAAGAAGTTGGAGAGTATAAAAAAGCAGTAGCCGATTGTACAAAGGTGCTAGAAAATGATGACACAAATGTATCTATATTGGTGCAACGTGCTCTCTTGTATGAGAGCATGGAAAAGTACAAGCTTGGTTCAGAAGATCTGAGGACTGTTCTAAAGATTGATCCTGGCAATAGGGTTGCGAGAAGTACCATCCATCGGCTGACAAAGATGGCTGATTAG 1476 0.4397 MNSNYGKPNNQTSASSASLKNIKFDFDLGIGSNQPKSLNDQKNPKSSHPYSSSSSSYSSAQPRPSWQPNKPSWTHQPAPNMANQSGLPGGPTSMVGDIFGKSWGSTQPSGSTSTIGVVNKNPNLFGDLVSSALGQSSNSSSNTPINSIPVSKASSTTSNKSSFSMGNMADALPKTSNTTTSSGSWGSSGYNNTSMGANKTPNLGGPSMQSMNSGSSAGSAMNVNRDPFSSLAGFGSKPSGSLNSAGMAARNNKAEDDGFGDFQKASKPAFPTFPSSTSTADNTSFPGFTNVNQNPMQTSAGGDPIDMLFSSSSASAGSAHVTSEGFGGKSSSNIDDWGLDSEFGGGGHDDGVTTTELEGLPPPPSGLSGSTAKGKGMDNYKQGQFADAIKWLSWAAILLEKTEDNAGMTEVLSCRASCYKEVGEYKKAVADCTKVLENDDTNVSILVQRALLYESMEKYKLGSEDLRTVLKIDPGNRVARSTIHRLTKMAD 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00401 491 MobiDBLite consensus disorder prediction 134 303 - -
Accr1g00401 491 Pfam Tetratricopeptide repeat 445 475 IPR019734 GO:0005515
Accr1g00401 491 MobiDBLite consensus disorder prediction 234 248 - -
Accr1g00401 491 SMART tpr_5 443 476 IPR019734 GO:0005515
Accr1g00401 491 SMART tpr_5 409 442 IPR019734 GO:0005515
Accr1g00401 491 SMART tpr_5 369 402 IPR019734 GO:0005515
Accr1g00401 491 MobiDBLite consensus disorder prediction 319 374 - -
Accr1g00401 491 MobiDBLite consensus disorder prediction 319 337 - -
Accr1g00401 491 MobiDBLite consensus disorder prediction 27 117 - -
Accr1g00401 491 MobiDBLite consensus disorder prediction 269 303 - -
Accr1g00401 491 MobiDBLite consensus disorder prediction 32 90 - -
Accr1g00401 491 MobiDBLite consensus disorder prediction 99 117 - -
Accr1g00401 491 MobiDBLite consensus disorder prediction 134 226 - -
Accr1g00401 491 SUPERFAMILY TPR-like 373 483 IPR011990 GO:0005515
Accr1g00401 491 Gene3D Tetratricopeptide repeat domain 369 490 IPR011990 GO:0005515
Accr1g00401 491 PANTHER OS03G0340700 PROTEIN 1 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00401 Accr-Chr1 7635573 7637961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00401 384 486 Calmodulin-binding Proteins AT3G25230 32.075 2.03e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00401 - - pcin:129293443 767.303