Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00374 ATGGTGTTAGGATGGAGCCGAAGAAAGAACAAGAACAGAAATCTCAACCTGCAGCTTGTAACTCCAAACCAGTTCATTTGTCCTGTTTCTCTTGATTTGATGAAAGATCCGGTCACGTTATCAACTGGAATCACCTACGATCGCGCGAGCATCGAACGGTGGCTTGAAGATGGGAATTTCACGTGCCCTGTGACGAATGAGATTCTCACCAGCTTCGATCTCGTTCCCAATCAATCGCTTAGGGTCTTGATTCAGGACTGGTGCGTTGAGAATCGCCGATTTGGGATCGAGAGGATTCCCACTCCTAGAATACCTGTGACTCCATCGCAAGTCGAAGAGATTCTTCTTCATCTTCAGGCCTCGGCATCGCGTTTCGATCGGTATGGTTTTCTGCAAGGTGTACAGAGAATCAAGGATTGGGGTTCCGAGAGCGAGAGAAACAAAAGGTGTATTGTGGATAATGGTACTCCTGGTGTATTAGCTTCTGCATTTTGTGAATTTGCGAATGACTCGGTTGAGGAAAACGTGAGTGTTCTGGAGGAGATTTTGAATGCCCTAAATTGGATGCTTCCGCTTCAATTGGAAGCCCAGAAAATCTTGCAATCTTCAGATGCCTTGCGTTGCTTGGTTTGGTTCTTGAAGAATCAAGATCTTTCTGGAAAACAGAATGCCATTGTTGCTTTGAGAGAGATCCTTTCTTCTGGTGATGAACAGACTTTAGAGACCATGGCAGAAATCGAAGGGACCATCGAGCTATTAGCGGAGTTCGTTAACAAGAGAATTAACCCAACAATCACAAAAGCTTCAATGGCGATTATTTATTACTTGGTTTCATCTTCTTATCCATCAAGTGAGAAGGTGAAGCTAAAATTTATAGGTCTTGGTTTGATCTCTTCACTTCTGGAGATCCTGATTGACTCAGACAGGAGCCTATCTGAGAAGACTTTAGGTGTTTTTGATTCACTCTGTGACATTCAAAAAGGAAGAGAAAGAGCTTTCAGTAATGCTCTCACAGTTCCTGTATTGGTGAAGAAGATTTTGAGGGTTTCACCTTCGGCGACAGATCACTGTGTATCTTCTATTTGGAAGTTATGCAGATATGGATCTAAAGATGAAGAAGATGAAGTAGAAGCAGCTCTGATTGAAGCACTTCAAGTTGGTGCATTTCAGAAGCTGTTAGTGGTTTTGCAGGTTGGTTGTGGTGATGAAACCAAAGAGAAAGCAACAGAGCTTCTGAAATTGTTTAATCCTTATAGGGGTGGCTTGGAATGCATAGACTCAGAGTTCAAGAATCTCAAGAGATCATTTTGA 1311 0.4279 MVLGWSRRKNKNRNLNLQLVTPNQFICPVSLDLMKDPVTLSTGITYDRASIERWLEDGNFTCPVTNEILTSFDLVPNQSLRVLIQDWCVENRRFGIERIPTPRIPVTPSQVEEILLHLQASASRFDRYGFLQGVQRIKDWGSESERNKRCIVDNGTPGVLASAFCEFANDSVEENVSVLEEILNALNWMLPLQLEAQKILQSSDALRCLVWFLKNQDLSGKQNAIVALREILSSGDEQTLETMAEIEGTIELLAEFVNKRINPTITKASMAIIYYLVSSSYPSSEKVKLKFIGLGLISSLLEILIDSDRSLSEKTLGVFDSLCDIQKGRERAFSNALTVPVLVKKILRVSPSATDHCVSSIWKLCRYGSKDEEDEVEAALIEALQVGAFQKLLVVLQVGCGDETKEKATELLKLFNPYRGGLECIDSEFKNLKRSF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00374 436 PANTHER WDSAM1 PROTEIN 21 416 IPR045185 GO:0061630
Accr1g00374 436 Pfam U-box domain 22 92 IPR003613 GO:0004842|GO:0016567
Accr1g00374 436 CDD RING-Ubox_PUB 22 74 IPR045210 -
Accr1g00374 436 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Accr1g00374 436 FunFam RING-type E3 ubiquitin transferase 21 92 - -
Accr1g00374 436 SUPERFAMILY ARM repeat 173 378 IPR016024 -
Accr1g00374 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 96 IPR013083 -
Accr1g00374 436 Gene3D - 116 414 IPR011989 -
Accr1g00374 436 SUPERFAMILY RING/U-box 21 97 - -
Accr1g00374 436 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00374 Accr-Chr1 7309203 7310513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00374 2 436 U-box Gene Family AT5G37490 41.781 8.58e-107 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00374 - - gmx:100794340 570.852