Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00348 ATGGTAAGAAAAAGGAGAACTGAAGCACCTAGTGGGGCTGAAAGCTCTGAGACTCGTGAGAGTGGGGGCACTAGTCGAGGACCTCAACACCATGGTGAAAGAAGTGCTCCACCCCCACAGCAGGCAACAGGAGGGGGAGGATCCCAAGGAGGTAGAGGTTGGGGTCCTCAAGGTGGACAGGGAGGTTATGGTGGGGGCCGGGGTCGTGGGACACCCCAACAGCAGTATGGTGCTCCCCCTGAATATCAAGGAAGGGGGAGGGGAGGGTACTCTCAGCAGTTAGGTCGTGGACGTGTTGGTGGGGGAAATGGCAGTGGCCGTGGTAGTGGACCTTCTTTTGGTGGCCCATTTGGACCTCAAGCTCCCGAGCTGCACCAAGCTACCCCTCTTCCACATCATGCTGGGGTGACTCCAACATCTGAGGCCAGTTCTTCTTCTCAACAGTTTGATCCCTCACAAGTGGAACAACAAATGGGGCAAATGACGATCCATTCAGAATCTGTTTCTCCTGCCCCACCCTCAAGTAAATCAGTGAGGTTTCCCCTTAGGCCCGGAAAGGGTAGCTATGGCACCAAGTGTGTAGTTAAGGCTAACCACTTCTTTGTTGAGTTACCTAATAAAGACTTGCACCAGTATGATGTCACTATCACTCCAGAAGTGACATCAAGGGGTGTCAACCGTGCCGTTGTGGAGCAGCTGGTGAGGCTATATCGAGAATCTCATCTGGGTAGGAGACTTCCTGCATATGATGGGCGCAAGAGCCTTTACACTGCAGGTCCTCTGCCTTTCATTTCGAAGGAGTTCAAAATCACTCTCCTTGATGAAGATGATGGATCGGGGGGGACAAGAAGAGAGAGAGAGTTCAAAGTTGTGATAAAAATGGCTGCCCGAGCTGATCTACATCATCTAGGACTCTTCCTGCAGGGAAGGCAGACTGATGCTCCTCAAGAAGCTCTTCAGGTTCTTGACATTGTGCTGCGTGAATTACCTACCTCTAGGTATTGTCCTGTGGCAAGATCATTTTATTCACCAGATCTGGGTAGAAGGCAACCATTAGGTGATGGATTGGAAAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCTACTCAGATGGGATTATCTCTTAACATCGATATGTCCTCAACTGCATTTTTTGAACCATTGCCGGTGATAGATTTTGTTACTCAGTTACTCAATCGGGATGTCACCTCACGCCCATTGTCTGATGCAGATCGCGTAAAGATAAAGAAAGCTCTTCGTGGTGTCAAAGTTGAAGTGACACACCGTGGAAATATGAGGAGAAAATATCGCATCTCTGGTCTGACTTCACAGGCAACTAGAGAGCTTACGTTTCCTGTTGATGCGAGTGGAACACTGAAGTCTGTTGTTGAGTACTTTTCGGAAACATATGGATTTGTCATTCAACATACCCAGTGGCCTTGCTTGCAAGTGGGCAATGCGCAGAGACCAAACTATTTACCAATGGAGGTTTGTAAGATAGTGGAAGGTCAAAGGTACTCGAAGAGGCTGAATGAAAAGCAGATTACCGCTTTGCTCAAAGTCACATGCCAGCGTCCTGTTGAAAGGGAGCGTGACATTATGCAGACAGTTCACCATAATGCTTACCGTGATGACCCTTATGCTAAAGAGTTTGGGATTAAAATCAGTGAAAAGCTAGCCCAAGTTGAAGCTCGTATCCTTCCTGCACCTCGGCTTAAATACCATGAGACAGGTAGGGAAAAGGATTGCCTACCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGTGGGACTGTCAACCACTGGATCTGCATCAATTTTTCCCGAAATGTTCAAGAAAATCTTGCAAGCAGGTTTTGTTATGAACTTGCTCAAATGTGCTATATATCTGGCATGGCATTCAACCCTGAGCCAGTACTTCCCCCATACAGTGCCCGTCCTGATTCGGTGGATAAGGTTCTCAAAACTCGATATCATGATGCAAAAGCCAGACTGAAGGATCAACAGCTTGATCTTCTGATTGTTATTTTGCCTGATAATAATGGCTCTCTTTATGGTGACCTGAAACGAATATGTGAGACAGATCTTGGGGTTGTTTCTCAGTGCTGTTTGACCAAGCATGTCTTTAAAATGAGCAAGCAGTATCTTGCTAATGTTGCCTTGAAAATCAATGTAAAAGTAGGTGGAAGGAATACAGTACTTGTTGATGCACTTTCGCGGTGTATACCTGTAGTCGGCGATCGACCGACAATTATATTTGGGGCTGATGTTACTCATCCACATCCTGGAGAGGATTCAAGTCCTTCCATAGCAGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATCACTATGTATGCTGGTTTGGTTTGTGCTCAAGCTCATCGACAGGAGCTCATTCAAGATCTCTTCAAACAATGGCAAGATCCATCAAAGGGAATGGTAACTGGTGGAATGATCAAGGAGCTTCTTAGATCTTTCCGGAGGGCCACTGGGCAGAAGCCAGAGCGCATCATATTTTACAGGGATGGTGTGAGTGAGGGGCAGTTCTATCAAGTTTTACTGTTTGAGCTTGATGCTATACGCAAGGCATGTGCATCCCTGGAGCCAAATTATCAGCCTCGTGTCACATTTGTGGTGGTTCAGAAGCGCCATCATACGAGGCTGTTTGCCAGCAATCATCATGACAGGAGTTTTGTTGACCGAAGTGGAAATATATTGCCTGGCACTGTTGTAGACTCTAAAATTTGTCATCCTACTGAGTTTGACTTTTATCTTTGTAGCCATGCTGGGATCCAGGGAACAAGCCGTCCAGCTCATTACCATGTGCTATGGGATGAGAACAATTTTACAGCCGATGGGCTGCAATCATTGACAAACAACCTTTGTTACACATATGCTAGATGCACTCGTTCTGTTTCAATTGTGCCGCCTGCATATTATGCACATTTGGCTGCCTTCCGAGCTCGATTCTATATGGAACCGGATACGTCAGAGAGTGGGTCCATGACCAGTGGTGCTGCTGCTGCACGTGGAGTTGGTGGAGCAGGGCGGAGCACTCGGCCACCTGTTGGTGTTGGTGATGTTAGGCCTCTTCCAGCTCTCAAGGAGAATGTGCAGAGGGTTATGTTCTACTGTTAA 3150 0.4708 MVRKRRTEAPSGAESSETRESGGTSRGPQHHGERSAPPPQQATGGGGSQGGRGWGPQGGQGGYGGGRGRGTPQQQYGAPPEYQGRGRGGYSQQLGRGRVGGGNGSGRGSGPSFGGPFGPQAPELHQATPLPHHAGVTPTSEASSSSQQFDPSQVEQQMGQMTIHSESVSPAPPSSKSVRFPLRPGKGSYGTKCVVKANHFFVELPNKDLHQYDVTITPEVTSRGVNRAVVEQLVRLYRESHLGRRLPAYDGRKSLYTAGPLPFISKEFKITLLDEDDGSGGTRREREFKVVIKMAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQPLGDGLESWRGFYQSIRPTQMGLSLNIDMSSTAFFEPLPVIDFVTQLLNRDVTSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDASGTLKSVVEYFSETYGFVIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPVERERDIMQTVHHNAYRDDPYAKEFGIKISEKLAQVEARILPAPRLKYHETGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQENLASRFCYELAQMCYISGMAFNPEPVLPPYSARPDSVDKVLKTRYHDAKARLKDQQLDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRCIPVVGDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITMYAGLVCAQAHRQELIQDLFKQWQDPSKGMVTGGMIKELLRSFRRATGQKPERIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPRVTFVVVQKRHHTRLFASNHHDRSFVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSESGSMTSGAAAARGVGGAGRSTRPPVGVGDVRPLPALKENVQRVMFYC 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00348 1049 MobiDBLite consensus disorder prediction 1 182 - -
Accr1g00348 1049 Gene3D paz domain 381 506 - -
Accr1g00348 1049 CDD PAZ_argonaute_like 387 501 - -
Accr1g00348 1049 SUPERFAMILY Ribonuclease H-like 662 998 IPR012337 -
Accr1g00348 1049 Pfam Glycine-rich region of argonaut 77 168 IPR024357 -
Accr1g00348 1049 Pfam Mid domain of argonaute 585 660 IPR032473 -
Accr1g00348 1049 ProSiteProfiles Piwi domain profile. 676 997 IPR003165 GO:0003676
Accr1g00348 1049 ProSiteProfiles PAZ domain profile. 388 502 IPR003100 GO:0005515
Accr1g00348 1049 FunFam protein argonaute 10-like 745 1049 - -
Accr1g00348 1049 Gene3D - 566 739 - -
Accr1g00348 1049 MobiDBLite consensus disorder prediction 137 174 - -
Accr1g00348 1049 MobiDBLite consensus disorder prediction 1002 1028 - -
Accr1g00348 1049 FunFam Argonaute 10 566 739 - -
Accr1g00348 1049 Pfam Piwi domain 677 996 IPR003165 GO:0003676
Accr1g00348 1049 Pfam N-terminal domain of argonaute 191 326 IPR032474 -
Accr1g00348 1049 FunFam Protein argonaute-2 381 507 - -
Accr1g00348 1049 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 168 998 - -
Accr1g00348 1049 SMART Piwi_a_2 676 997 IPR003165 GO:0003676
Accr1g00348 1049 CDD Piwi_ago-like 546 996 IPR045246 -
Accr1g00348 1049 SUPERFAMILY PAZ domain 382 542 IPR036085 GO:0005515
Accr1g00348 1049 Pfam Argonaute linker 2 domain 528 574 IPR032472 -
Accr1g00348 1049 Pfam Argonaute linker 1 domain 337 385 IPR014811 -
Accr1g00348 1049 Pfam PAZ domain 392 518 IPR003100 GO:0005515
Accr1g00348 1049 SMART DUF1785_2 335 387 IPR014811 -
Accr1g00348 1049 Gene3D - 745 1049 IPR036397 GO:0003676
Accr1g00348 1049 SMART PAZ_2_a_3 392 524 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00348 Accr-Chr1 6925333 6931199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00348 81 1049 Eukaryotic Initiation Factors Gene Family AT1G48410 79.939 0.0 1575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00348 K11593 - qsu:111993289 1712.97