Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00329 ATGTCTTCTGCCGGCGGTGACGGCGGCGTGTTTACGCCCCGCGCTTCTTCTCAATTATATTTTTGCCACCAGTGCGACGCTACCGTATCCATTACGACCTCATCTTCCGGTGATCTCGTTTGTGCCATATGCAACGGCGGCTTCATTGAAGAAGTCGATAATCCCAGCCCTAATTTTACCAATCCCTCCTTTTCTTTTTCCTCTGAGTTCGGCGGCGGCGGCGGTGCCGGCTTTCCTTTAGTATTCTCTACCACTTCAACCGGCGGCGGAAGTGGTGGCGGTGGGCCGGTATTCGACGATCTTTCCACTCTTTTTGGCGGTGGACCTAATCGATCGTCTCCGTTCGGAGAAAATGATGCGTTCAACCCCTTGGCGTTTCTTCAGAACTATGTTCAAACCCTGAGAGCCGGCGGTGCTAATGTTCAATTTGTGATAGAGAACTCTGGAGACCCTAGTGGAAACTTCCGTCTGCCTGCGAATCTCAATTTTGGTGATTATTTTTTTGGACCTGGCCTCGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCTAACCGACATGGGACGCCGCCAGCCTCGAAATCTGCCATTGAGGGCCTTCCTACCATTAAGATTTCAGAAGAGTTGCTGACTTCGGATTCATCGCAGTGTGCCGTCTGTAAAGATACATTTGAGCTCGCAGAAGAGGTGAAGCAGATGCCATGTAAACATATCTATCATTCAGAATGCATTTTGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTTTGCCGGTTCGAGTTACCAACGGATGATCCGGACTACGATCAACGTCGGGGGGCTTCTACCCAGGTGAATCGAAATCAACCTGCAAGGGAAGATGGGTCCGCTGGTTCTTCTGAAAGCGGTAATAGCGGCGGCAGCGGTGGCGGTAGTGAAGCATCTGGCCAAGACTCACCGAGAGAACGCAGGTTTAGGGTTTCTTTGCCTTGGCCTTTTAGGCAATTGGCTTCTATAGCCGAGACGAGCAGTACTGGGAACGCCAACGTCAGTGGAAATAATAGTGGGGACTCAAATTCTGGAAGAAGTGGAAACCAGAATTTTGAGTCTGAGACCAGACAAGAAGATCTCGATTAA 1116 0.5009 MSSAGGDGGVFTPRASSQLYFCHQCDATVSITTSSSGDLVCAICNGGFIEEVDNPSPNFTNPSFSFSSEFGGGGGAGFPLVFSTTSTGGGSGGGGPVFDDLSTLFGGGPNRSSPFGENDAFNPLAFLQNYVQTLRAGGANVQFVIENSGDPSGNFRLPANLNFGDYFFGPGLEQLIQQLAENDPNRHGTPPASKSAIEGLPTIKISEELLTSDSSQCAVCKDTFELAEEVKQMPCKHIYHSECILPWLELHNSCPVCRFELPTDDPDYDQRRGASTQVNRNQPAREDGSAGSSESGNSGGSGGGSEASGQDSPRERRFRVSLPWPFRQLASIAETSSTGNANVSGNNSGDSNSGRSGNQNFESETRQEDLD 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00329 371 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Accr1g00329 371 SMART ring_2 217 257 IPR001841 -
Accr1g00329 371 MobiDBLite consensus disorder prediction 272 308 - -
Accr1g00329 371 FunFam E3 ubiquitin-protein ligase RING1-like 178 264 - -
Accr1g00329 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 262 - -
Accr1g00329 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 264 IPR013083 -
Accr1g00329 371 MobiDBLite consensus disorder prediction 268 371 - -
Accr1g00329 371 Pfam Ring finger domain 216 258 IPR001841 -
Accr1g00329 371 Pfam zinc-ribbon 18 51 IPR039525 GO:0061630
Accr1g00329 371 MobiDBLite consensus disorder prediction 330 361 - -
Accr1g00329 371 CDD RING-H2_RNF126-like 216 258 - -
Accr1g00329 371 SUPERFAMILY RING/U-box 196 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00329 Accr-Chr1 6560529 6561644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00329 158 270 C3H Transcription Factor Family AT5G01980 49.558 3.86e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00329 K11982 - qsa:O6P43_005293 419.468