Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00314 ATGGGCTTGGTGCTAATACTGAGTATATCATATCAGTTGATGCTGAGGACTTTTCCCAAGGAAGAATGCTTATGTTGGAAAGTTAAGTTTCGGAAGGTTGCAGATGATACCTTCACCATGGATTATAGGCAGCCCTTATCAGCCTTCCAGGCTTTTGCTATTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTGA 201 0.4328 MGLVLILSISYQLMLRTFPKEECLCWKVKFRKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00314 66 Pfam Tub family 28 61 IPR000007 -
Accr1g00314 66 Gene3D Tubby Protein; Chain A 11 66 IPR025659 -
Accr1g00314 66 SUPERFAMILY Tubby C-terminal domain-like 27 66 IPR025659 -
Accr1g00314 66 PRINTS Tubby superfamily signature 23 42 IPR000007 -
Accr1g00314 66 PRINTS Tubby superfamily signature 44 66 IPR000007 -
Accr1g00314 66 PANTHER TUBBY-RELATED 28 64 - -
Accr1g00314 66 ProSitePatterns Tub family signature 2. 51 66 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00314 Accr-Chr1 6184219 6184774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00314 28 66 TUB Transcription Factor Family AT1G53320 89.744 7.77e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr1g00314 Tub 8.3e-15 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00314 K19600 - oeu:111395565 77.4109