Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr1g00307 | ATGGATTTTAGTTCAGAGTACTTGAAGAAGTGGAAGTATGATGTGTTTTTGAGCTTCAGAGGTGAAGATACTCGCAACAATTTCACAGGCCATCTATATGAAGCTCTGTGTCAAAAAGGAGTATATACTTTCATAGACAATGAGGAGCTCAACAGGGGCCAGGGGATTTCACCAGCACTTGAGAAAGCTATTGAAGACTCTAGAATCTCAGTTGTTGTATTGTCTAAAACCTTTGCTTTCTCCACTTCATGCTTAAATGAGGTCCTTAAGATCCTTGAGATCAAGGATTCCAAGGGGCAATTGGTTTTGCCAGTGTTTTACAACGTGGATCCTTCAGAATTACGACATCAAAAGGGAAGTTTTGAGGAAGGATTGGTCAAACACAAAGACAGGTTAGAAAACATGGAGAAGGTGAAGAGGTGGAGCGAATCCTTATGTCACGTTGCTTCTTTATCTGGTTGGCATCTTAGTAAAGGGCATGAATCTACATTCATCAAACGAATAGTCGAAGAAATACTCAATAGGCTAAACCGTACACCTTTGAACGTTGCTAAACATCCTGTGGGATTGGAGTCTCCTGTATTGGACATGGAATCATTGCTGGGCACCCAATCAGAAAAAGATGTGAGGGTTGTTGGAATCCATGGAATTGGAGGAATAGGTAAAACAACCATTGCTAAAGCTCTTTATAACCATATCTCTAACCAATTTGAGGCCCACACATTCATTGCAAACGTAAGAGAAATCTCAAAGCAAAAGTTCGGCTTAGTTCGATTACAAGAAGCACTTCTTTCGGAGACACTAAACTGCAGAGACATTAAAGTTGGAAGTGTAGATAGAGGAATCAACCTCATAAAGAGCAGACTTTGTTCTAAAAGGGTTCTCATAGTTATCGATGATGTAGATTCGATAGAGCAACTTGAATCATTGGTTGGAGAAAACAGCTGGCTTGGCTCAGGAAGCAGAGTTGTCATAACAACTAGAGATGAACATTTGTTAATTGCTCACAATATTGAAGCAGTCTACAAAGTTAAGGAATTAAGTTATGATCATGCTCTTGAATTGTTCAGCTGGTATGCCTTCAAAAAACCCTGTCCCCCCACAAATTATGAGAACCTTTCATCTCACATATTAAACTACTCCAAGGGTCTTCCATTGGCTTTAACTGTGTTAGGATCTTACTTATTTGGGAGAAGTATAACAGAGTGGAAAAGTGCAATACACAAACTAAAGAACACTCCAAGCAAACAGATTTCCAAAGTGCTTAAGATCAGTTTTGATGGGTTGGAGGAAAATGAGAAGGCCATGTTTTTAGATATTGCATGCTTTTTCAAAGGAGAGGACAAAGAGTATGTGAAGAAGATCCTAGAAGCTTGTGACTTGCACCCGGACATTGGAATCGGAGTTCTTGTGGACAAGTCCCTTGTTACTGTTGATATGAACAAGCTTTGGATGCATGACTTGATTCAAGAAATGGCTAAAGAAATTGTTCTCTCTGAATGCCCTAAAGACCCTAGCAAACGTAGCAGATTATGGTTTTATCAAGATGTTCTTCAAGTATTGATGGAACAAAAGGAAAGTAATAGCATAGAAGGCATAAGGCTAGACGTACCTGAAACTGAAAGGGTGAAGATTAGTGGCAAAGCCTTGGAGAAGATGAAAAAGCTTAGAATTCTTATGGTTGATAATGCAAGCTTTTCAGGTGGTGTTCCATATCTGTCTGAAGAGCTAAAGTTAATTGATTGGCCAAAATATCCATCTTCAACTCTGCCACCAAACTTCTATCCAAAGAGGCTTGTTTCTGTAAAGATGAATCATAGCCGCATTAAGCATTTATGGAAGGGAGTCAAGATATTTCGAGATTTGAAGTTTTTATCTTTTAGCTGTTGCGAATATCTCTCAGAAATTCCAAACCTCTCATTGACCCCACACATTGAGAGTTTGAATCTAGACCATTGCAAAAGCCTAATGGAAGTTCATGAGTCTGTGGGATCTCTTGAAAAGCTTGTTACCTTAAACCTTGCTTTTTGCTCCAATCTCAAGACTCTTCCAAGTGGTTTCAGGTTAAAGTCTCTACGCTCTCTTCTCCTTACAGGCTGCTCAAACCTCAGAAACTTCCCTGAGATTGTTGAGAAAATGGCAAGTGTCGAAGAAGTCCTTCTCGAAGGGACTTCCATAAAAGCATTACCTCAATCAATAGAACATCTGATTGGTCTAAAAGCATTGTTGTTGGATTCTTGTCAAATGCTTGAGCATGTTCCTAGTAGCATTGAGAAATTGCAGTACCTTACTTGTCTATCTCTCACAAACTGCCCGAAAATAAGAGAGCTTCCATTGCTGTCACGGAATACAAGTTTAATATGGACAGATAATTGCAAATCGTTGCAAAAGTTTCCACATTTATACAGCCCATCAAGTTCATTTGTTGGTGTACAGGACTTCAGAAGAGTTTGTTATATGAGTTTTGTCAATTGCCATAAACTGATTCATAAGCAATTACAAGATCACATCACAAATCGTTTATTTCAAGAGGTTGCCCTCTTTTCTCTTCATCTTCCTTTATAG | 2565 | 0.3903 | MDFSSEYLKKWKYDVFLSFRGEDTRNNFTGHLYEALCQKGVYTFIDNEELNRGQGISPALEKAIEDSRISVVVLSKTFAFSTSCLNEVLKILEIKDSKGQLVLPVFYNVDPSELRHQKGSFEEGLVKHKDRLENMEKVKRWSESLCHVASLSGWHLSKGHESTFIKRIVEEILNRLNRTPLNVAKHPVGLESPVLDMESLLGTQSEKDVRVVGIHGIGGIGKTTIAKALYNHISNQFEAHTFIANVREISKQKFGLVRLQEALLSETLNCRDIKVGSVDRGINLIKSRLCSKRVLIVIDDVDSIEQLESLVGENSWLGSGSRVVITTRDEHLLIAHNIEAVYKVKELSYDHALELFSWYAFKKPCPPTNYENLSSHILNYSKGLPLALTVLGSYLFGRSITEWKSAIHKLKNTPSKQISKVLKISFDGLEENEKAMFLDIACFFKGEDKEYVKKILEACDLHPDIGIGVLVDKSLVTVDMNKLWMHDLIQEMAKEIVLSECPKDPSKRSRLWFYQDVLQVLMEQKESNSIEGIRLDVPETERVKISGKALEKMKKLRILMVDNASFSGGVPYLSEELKLIDWPKYPSSTLPPNFYPKRLVSVKMNHSRIKHLWKGVKIFRDLKFLSFSCCEYLSEIPNLSLTPHIESLNLDHCKSLMEVHESVGSLEKLVTLNLAFCSNLKTLPSGFRLKSLRSLLLTGCSNLRNFPEIVEKMASVEEVLLEGTSIKALPQSIEHLIGLKALLLDSCQMLEHVPSSIEKLQYLTCLSLTNCPKIRELPLLSRNTSLIWTDNCKSLQKFPHLYSPSSSFVGVQDFRRVCYMSFVNCHKLIHKQLQDHITNRLFQEVALFSLHLPL | 854 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr1g00307 | 854 | SUPERFAMILY | "Winged helix" DNA-binding domain | 417 | 521 | IPR036390 | - | |
| Accr1g00307 | 854 | Gene3D | Ribonuclease Inhibitor | 527 | 714 | IPR032675 | - | |
| Accr1g00307 | 854 | Pfam | TIR domain | 12 | 182 | IPR000157 | GO:0007165 | |
| Accr1g00307 | 854 | PRINTS | Disease resistance protein signature | 211 | 226 | - | - | |
| Accr1g00307 | 854 | PRINTS | Disease resistance protein signature | 288 | 302 | - | - | |
| Accr1g00307 | 854 | PRINTS | Disease resistance protein signature | 381 | 395 | - | - | |
| Accr1g00307 | 854 | PRINTS | Disease resistance protein signature | 664 | 680 | - | - | |
| Accr1g00307 | 854 | Gene3D | - | 7 | 175 | IPR035897 | - | |
| Accr1g00307 | 854 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 174 | 440 | IPR027417 | - | |
| Accr1g00307 | 854 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 4 | 154 | IPR035897 | - | |
| Accr1g00307 | 854 | Gene3D | - | 176 | 341 | IPR027417 | - | |
| Accr1g00307 | 854 | Pfam | NB-ARC domain | 204 | 421 | IPR002182 | GO:0043531 | |
| Accr1g00307 | 854 | Gene3D | Ribonuclease Inhibitor | 715 | 834 | IPR032675 | - | |
| Accr1g00307 | 854 | ProSiteProfiles | TIR domain profile. | 11 | 176 | IPR000157 | GO:0007165 | |
| Accr1g00307 | 854 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 13 | 773 | IPR044974 | GO:0006952 | |
| Accr1g00307 | 854 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 9 | 178 | - | - | |
| Accr1g00307 | 854 | SUPERFAMILY | L domain-like | 500 | 804 | - | - | |
| Accr1g00307 | 854 | Gene3D | - | 346 | 430 | IPR042197 | - | |
| Accr1g00307 | 854 | SMART | till_3 | 12 | 151 | IPR000157 | GO:0007165 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr1g00307 | Accr-Chr1 | 6110629 | 6117520 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr1g00307 | 13 | 782 | WRKY Transcription Factor Family | AT4G12020 | 32.405 | 1.15e-106 | 360 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr1g00307 | - | - | ccaj:109793662 | 1118.22 |