Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00298 ATGCCGCTCCCATCAACCCCTCAAATCATCACCTGCAAAGCTGCGGTGGCATATGGCGCTGGAGAGCCGTTGGTAATAGAGGAAGTTGAAGTGAGCCCTCCTCAACCTTCGGAGATTCGGATTAAAGTTGTCTCCACCTCTCTCTGTCGCAGCGATCTCTCCGCTTGGGAATCCCATAACATATTTCCTCGAATATTTGGCCATGAAGCGTCAGGGATTGTTGAGAGTGTGGGCGAGGGAGTGACTGAATTCAAGGAGGGAGACCATGTGCTAACTGTCTTCATTGGAGAATGCAAGACATGCAGGCTGTGCAAATCTGGAAAAACAAACATATGTCAAGTTCTGGGATTGGAAAGAAGAGGTTTAATGCATAGTGATCAGAAGACACGTTTCTCAGCAAAAGGGAAGCCTATTTATCACTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTTGTGCATTCTGGGTGTGCAGTCAAAGTCAGCCCAAATGCTCCTCTCGAGAAAGTATGCCTTTTGAGCTGTGGTGTTGCTGCAGGTCTGGGTGCTGCATGGAATGTTGCTAATGTATCAGAAGGATCAACAGTGGTGATATTTGGACTTGGAACTGTTGGCCTTTCTGTTGCACAAGGTGCTAAACTTAGGGGGGCATCTCGAATAATTGGTGTGGACAACAACCCTCAGAAGTGTGAAAATGCTAAAGCTTTTGGAGTTACAGAAGTTGTTAACCCAAATTCCTATGATGAACCTATCGCTCAGGTTATTAAGCGCATTTCCAATGGAGGAGCCGATTTCTCTTTTGAATGCGTAGGCGATACCGATATGATAACCACTGCACTGCAGTCCTGCTGTGATGGATGGGGTACGACTGTTACCCTTGGTGTGCCAAAAGTGAAACCTGAGATGTCAGCTCATTATGGACTACTGTTAATGGGAAGAACATTGAAAGGATCTTTGTATGGAGGATGGAAACCCAAATCTGATTTGCCTTCATTAGTGGAGAAGTATGTGAATAAGGAAATCCAGATTGATGATTACATAACACACGATCTGCCGTTTGAAGAAATTAACAAAGCTTTCAATCTCATGAGAGAAGGAGAGTGTCTGCGCTGTGTTATCCACATGCCCAGGTAA 1134 0.4489 MPLPSTPQIITCKAAVAYGAGEPLVIEEVEVSPPQPSEIRIKVVSTSLCRSDLSAWESHNIFPRIFGHEASGIVESVGEGVTEFKEGDHVLTVFIGECKTCRLCKSGKTNICQVLGLERRGLMHSDQKTRFSAKGKPIYHYCAVSSFSEYTVVHSGCAVKVSPNAPLEKVCLLSCGVAAGLGAAWNVANVSEGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCENAKAFGVTEVVNPNSYDEPIAQVIKRISNGGADFSFECVGDTDMITTALQSCCDGWGTTVTLGVPKVKPEMSAHYGLLLMGRTLKGSLYGGWKPKSDLPSLVEKYVNKEIQIDDYITHDLPFEEINKAFNLMREGECLRCVIHMPR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00298 377 SUPERFAMILY GroES-like 326 374 IPR011032 -
Accr1g00298 377 Gene3D - 180 318 - -
Accr1g00298 377 Pfam Alcohol dehydrogenase GroES-like domain 37 160 IPR013154 -
Accr1g00298 377 PANTHER ALCOHOL DEHYDROGENASE 8 373 - -
Accr1g00298 377 FunFam Alcohol dehydrogenase 6 15 193 - -
Accr1g00298 377 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 318 - -
Accr1g00298 377 Pfam Zinc-binding dehydrogenase 204 327 IPR013149 -
Accr1g00298 377 CDD alcohol_DH_plants 10 374 - -
Accr1g00298 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Accr1g00298 377 Gene3D - 15 370 - -
Accr1g00298 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 339 IPR036291 -
Accr1g00298 377 SUPERFAMILY GroES-like 6 185 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00298 Accr-Chr1 5857984 5861847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00298 37 112 Monolignol Biosynthesis Gene Families AT2G21730 38.750 3.76e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00298 K00001 - gmx:100819938 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g00298 1 5857984 5861847 Accr1g00298 1 5857984 5861847 ECH