Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00246 ATGGACTCTAGCAATTGTCATGTTTCATGTAAAAGGCCAAGCCCTTCTTCTCCTTCAGCCATTAATGAACAAGATCTTAAAGAACAGAAAAAGATCATGGTAGTAAGGTACAAGGAATGCCTCAAGAACCATGCAGCTTCATTAGGTGGACATGCAATTGATGGTTGTGGCGAGTTCATTTCTTCTTCAGAAGTAGAAGAAGGCTCACTTGAAGCTTTCAAGTGCTCGGCCTGCAATTGCCACAGAAACTTCCACAGAAAGGAGATTCAATTCTGTTATAATTCAAACTCTAATGATCAGAATCATCTCTCCCCATTTCTTCCAAACACATCTCAGGTCATTGATCTGGATCATCTTTTATTATCTCCCAACAAAACTGGCTCAAACCTTTCTGATCAGTCACGTGATGATTATGGGGAAGAAGAAAATCATAGGAATCATAATTATAAAGAAGAAGATGAGAAGGTGGTGAAGAAGAGGTTTAGGACTAAGTTCAGTGCAGAACAGAAGGAGAAGATGGTGAAATTTGCAGAGAAAGTAGGGTGGAAGATGCAGAAAGTTGAAGAATCTGTGGTGGAGCGGTTTTGTGAAGAGATAGGAATTAAGAGGAGAGTCCTCAGAGTGTGGATGCACAACAACAAGAATACTTATGCCAAAAACGTGTGA 666 0.4009 MDSSNCHVSCKRPSPSSPSAINEQDLKEQKKIMVVRYKECLKNHAASLGGHAIDGCGEFISSSEVEEGSLEAFKCSACNCHRNFHRKEIQFCYNSNSNDQNHLSPFLPNTSQVIDLDHLLLSPNKTGSNLSDQSRDDYGEEENHRNHNYKEEDEKVVKKRFRTKFSAEQKEKMVKFAEKVGWKMQKVEESVVERFCEEIGIKRRVLRVWMHNNKNTYAKNV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00246 221 Pfam ZF-HD protein dimerisation region 35 89 IPR006456 -
Accr1g00246 221 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 216 - -
Accr1g00246 221 SUPERFAMILY Homeodomain-like 154 219 IPR009057 -
Accr1g00246 221 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 36 89 IPR006456 -
Accr1g00246 221 MobiDBLite consensus disorder prediction 1 22 - -
Accr1g00246 221 Gene3D - 142 220 - -
Accr1g00246 221 MobiDBLite consensus disorder prediction 124 151 - -
Accr1g00246 221 MobiDBLite consensus disorder prediction 134 151 - -
Accr1g00246 221 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 37 88 IPR006456 -
Accr1g00246 221 NCBIfam homeobox domain, ZF-HD class 158 215 IPR006455 -
Accr1g00246 221 FunFam Zinc-finger homeodomain protein 2 144 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00246 Accr-Chr1 4776110 4776775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00246 25 219 ZF-HD Transcription Factor Family AT2G02540 44.700 2.36e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Accr1g00246 ZF-HD_dimer 5.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00246 - - pcin:129292084 272.322