Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00242 ATGGTCCTGATTGGAAGGAAGCCATTGAAGCGGATGAAGACGAGAGTGACGGCTGATTTCTACGACTTCCTCACTTTTCCGCCGCCGTCACTCGTCGTGGCAGATGAGATCTCCGGTGGACCCTTTCGGACAAACGTGCGCTCGTTCCTTTCGAAGCACGCGCTGCTCCCACCGCCGTCCGCACTGTTTCCTCACTTGCTGACGTGGCAGATCCTTTTCCGAGTCGGAGACCAGACGGACGGTCCGGACTCGACGCCGTCAGTGGTCTGCCTCGACGTCGTGGAAGAGGATGTGGCCAGATCCAGATCAGTCTACTGCGATCAGTGTCGAGTTGTTGGTTGGAGTGATCACCCAGTATGCAGTAAACGTTACCACTTTATAATCAAGGCTGATGGAAGCTCCATCGGTGGATACCACAAGCCATGCATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGTAGGTCATGCAGCCATGTGACGACCACTGATGATGTTGAAGACTGGGTGTATCACCAGTTAGAGAACACGACCCATCTTTTACATGGTGTTTTCCATGCAAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGGGAAGGGGGCTCGAGAGTTCTGTCTGGTTTTCATATCATGAACTTCTGGGATCGTCTCTGCAAGTCCCTTGGAGCCAGAGAAGTTAGTGTAATGGATGTTTCAAGGAAATATGGGCTGGAGTACCGCCTGATCCATGCTATTACAAAGGGGCATCCCTGGTATGGTGATTGGGGCTACCAATTTGGCACTGGTAGCTATGGTCTAACGCATGAAGCATATAAGTCTGCAGTTGAATTCCTTTCCAGTCTACCACTGTCCCTATTTCTCTCGGAAGGAAAGAGACCTGATTCTCGATTGCAGGACACAATCTCATATTACCAGTCTTTGTCTGAAACTGGGCTTGTAACTATAAGGGATCTCTTTTGTTTTTTGATTGGTTTGATTCACGATGCTCGCATGACAGTGTCAAGGGCTGATGATGTCACTTGCAAGAAGCGCTGTTGTAATGCTGCTGGAGTGTCATGTTTCTCATCAATGAGTGACATTGAACGTGTGGAGGGAGCAATGCTCAGAGTGTTGCGTGCAGTGTCAGGATCCAATTGGGTGAGCCAGCGTACTCTTAAGGGTGCTGTCTGCAAAGTGGCCTCTCCAGAGCTTCTTGATTACTGTCTCGGAGAAATAGGAGGAAAAGCAATATTTGGTGGTATGGTTGTCAATACCCAATGCAATCCTGTCACTGGAGCTTCAGAGTACAGACTAGAGGCAGGGAACAGCGTTTCCTATGGGACGACCGCAAGCAATAATAAATCCATGCGTTTGAAGTATCCATCTGAAGTGAATCTCCTGCACGACTTGAGATATTTATACGAGTCTTTTCTTCATCCACATAAGATGCTAAGCTATGACTCTGAGGAGAAAAGGAATGCAGCAATGAGCTATGCTCAGAAACTTCTTGATTGCAAGCATTTTGTAAAAGATTATAGACCTGAGATGGTGCCAATGACAAGCTTGAATAGGATACGCCTCTCGTGTCAGGTAGTACTAGTTGATGAAACTGATGAAGCTTTCGCAAATCCTCCCCCAGAATTAATAGTCCTGCCCTGGAATGCCACTGTGTTCGACCTCAAGACCGAAGCATCAAATGCTTTTCAAGATGTATATCTCATGTGTAAAATATTTCAAGTTGATGAGCTCTTTGGCTGTAGCAGCGCAGATGATTCCACTTCGGTCAAACTCTTGGTAGGATCAACAGAATTGGTTCGTGTCCGAGGAAAATGCATCGGGAAGAATGTATTGAGCAGATTCCAAAGCGAACGTGGACTTGAGAGGTGGACCGTCGATTGCAGCTGCGGGGCCAAAGATGATGATGGAGAGAGAATGTTGGCATGTGATGCGTGTGGGGTCTGGAGGCACACTCGGTGTTCTGGTATTCTTGATGCAGATCCTGTCCCAGTGAAGTTCTTTTGCCCCAGATGCCAAAATTTTGAGTTGAGGCCGTATTCAAGTGGACACTGA 2058 0.4772 MVLIGRKPLKRMKTRVTADFYDFLTFPPPSLVVADEISGGPFRTNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDQTDGPDSTPSVVCLDVVEEDVARSRSVYCDQCRVVGWSDHPVCSKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCRSCSHVTTTDDVEDWVYHQLENTTHLLHGVFHANGYGHLLRVNGREGGSRVLSGFHIMNFWDRLCKSLGAREVSVMDVSRKYGLEYRLIHAITKGHPWYGDWGYQFGTGSYGLTHEAYKSAVEFLSSLPLSLFLSEGKRPDSRLQDTISYYQSLSETGLVTIRDLFCFLIGLIHDARMTVSRADDVTCKKRCCNAAGVSCFSSMSDIERVEGAMLRVLRAVSGSNWVSQRTLKGAVCKVASPELLDYCLGEIGGKAIFGGMVVNTQCNPVTGASEYRLEAGNSVSYGTTASNNKSMRLKYPSEVNLLHDLRYLYESFLHPHKMLSYDSEEKRNAAMSYAQKLLDCKHFVKDYRPEMVPMTSLNRIRLSCQVVLVDETDEAFANPPPELIVLPWNATVFDLKTEASNAFQDVYLMCKIFQVDELFGCSSADDSTSVKLLVGSTELVRVRGKCIGKNVLSRFQSERGLERWTVDCSCGAKDDDGERMLACDACGVWRHTRCSGILDADPVPVKFFCPRCQNFELRPYSSGH 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00242 685 CDD PHD_MMD1_like 628 673 - -
Accr1g00242 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 677 IPR013083 -
Accr1g00242 685 SMART PHD_3 628 674 IPR001965 -
Accr1g00242 685 SUPERFAMILY FYVE/PHD zinc finger 618 675 IPR011011 -
Accr1g00242 685 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 679 - -
Accr1g00242 685 Pfam PHD-finger 629 675 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00242 Accr-Chr1 4754187 4759269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00242 83 673 PHD Transcription Factor Family AT5G22260 29.872 7.57e-84 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr1g00242 PHD 5.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00242 K26271 - gmx:100818189 1013.06