Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00180 ATGGGGAGGCAGCCAACTGATAAGGAAAAACCTAAACACAGGAAAGGGTTATGGTCACCTGAAGAAGACAATAAGCTCAGAAACTATATCGTCAAGCATGGCCATGGCTGCTGGAGCTCTGTTCCCATCAATGCAGGTTTGCAGAGGAATGGCAAGAGTTGCAGATTGAGGTGGATCAACTATCTAAGGCCAGGATTGAAGAGAGGGATGTTCAGCAAACAAGAGGAGGAGACAATCTTGACCCTTCACCACATGCTAGGCAACAAGTGGTCTCAGATGGCACAGCATTTACCAGGAAGGACAGATAATGAGATAAAGAACCACTGGCATTCATATTTGAAAAAGAAAGTGGCCAAGCCCAAGGAAGAGGAAATGCAATCTAATAATAATTATAAACAAATGCAGCACGCTAGCTCAAGCTCAGATACCTTTGACTCTTCTTCTTCATCAAGTCAAAAACCAGCAATTCCAATCTCTGATCACTTCTCTTCTTTACAAAACTATAACTTCATCAAAGAGGTTGGTCAGAGCTCCTTACCAAAACTTCTATTTGCTGAGTGGCTTTCATTAGATCAAGCGAACAGTGGGATCCCTGCAAATTCAGGTGATGACCCTTTTGTGTTCGGAAATGGAAGTTTTGATCAATACTCAGATTTCCACGAAGCCGGGATACATGGTGTATCAGAAGGGGGAAGTTACGGTGGGGAGTTTGATAATGGTCTAACAACCCCAAATGCTGCAGAAGCTACTGAAGTCTTCAATGCACAGTTCAACATAGCAAATCAAATGGCAGGAAATGGAGTCATCCATTTCCCAAGTTTCAGCATGAACAATGATGTAATGTACATATAG 852 0.4261 MGRQPTDKEKPKHRKGLWSPEEDNKLRNYIVKHGHGCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGMFSKQEEETILTLHHMLGNKWSQMAQHLPGRTDNEIKNHWHSYLKKKVAKPKEEEMQSNNNYKQMQHASSSSDTFDSSSSSSQKPAIPISDHFSSLQNYNFIKEVGQSSLPKLLFAEWLSLDQANSGIPANSGDDPFVFGNGSFDQYSDFHEAGIHGVSEGGSYGGEFDNGLTTPNAAEATEVFNAQFNIANQMAGNGVIHFPSFSMNNDVMYI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00180 283 Gene3D - 15 67 - -
Accr1g00180 283 MobiDBLite consensus disorder prediction 117 155 - -
Accr1g00180 283 CDD SANT 18 62 IPR001005 -
Accr1g00180 283 CDD SANT 71 113 IPR001005 -
Accr1g00180 283 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Accr1g00180 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Accr1g00180 283 SMART sant 67 115 IPR001005 -
Accr1g00180 283 SMART sant 14 64 IPR001005 -
Accr1g00180 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Accr1g00180 283 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr1g00180 283 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Accr1g00180 283 MobiDBLite consensus disorder prediction 127 155 - -
Accr1g00180 283 FunFam MYB transcription factor 12 68 - -
Accr1g00180 283 PANTHER MYB DOMAIN PROTEIN 55 1 162 - -
Accr1g00180 283 FunFam MYB transcription factor 70 146 - -
Accr1g00180 283 Gene3D - 70 143 - -
Accr1g00180 283 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Accr1g00180 283 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00180 Accr-Chr1 3523193 3525351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00180 8 123 MYB Transcription Factor Family AT3G48920 69.828 2.34e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr1g00180 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00180 K09422 - qsa:O6P43_008229 331.643