Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00171 ATGATCGAAACCAGACGATCTCACTTCAGCCTACTCTTCCTTCTCCTAGGCCTACCGACGTATTATGTCTCCGGCCGCCACGTTCCACACTCAGCTTCTGCACCCTCGCCGTCGTCGATGACTCCCGAGGTTGACATCGCAACTCTTCTCAAGGCCACAGCCGTCGTATGCGCTGTCCTCTTCATCACCTTCTTTTCGGCATACTTCAATTACTGGACCGCCGTTATTTTCGCCAGACAGCACGATTTGCCCACCGGTGGCCGTGACGGCTTAAGTTGGCGGTGTTCTTGCTCTCGAGGAATAGACCGGAAAATCCTGGACACATTCCCGATCCTCGTATATTCCACCATCAAAAACCAAAAAATCGGAAAAGGAGAGCTTGAATGCACAGTGTGCTTGAGCGAATTCGAAGACCACCAGACTCTCCGGTTGATACCAAAATGTAATCACGTGTTTCACCCGGAGTGTATCAACGCCTGGTTAGCTTCTCATGATACTTGCCCCCTTTGTCGCGCAAATCTGAATCCAGATCCCGGCGAGGTCGCCATCAGAATGCCGACTCAGTTGAACGCTGATGAACCGAACGAAGAAAGTGGAGGCAGAAGCATGAGCAGTGAAGCGAGTGAAACACAGAACCACCCAGCGGCGCAGGTGCCAAACGACGTTGGTGCGAGTAGCAGCAACTCAGCAAACAACATGGAGGAAGACTGCAGAGCTAAGCCAAGTCGGAATCGGAGAACGAGATGGGGAAAGTACAAGAGGCTTCAAAAATCCAACTCGACGGGACATTCGCTGGTTGAACAGCCTGAAGCAACGCCGTCAAGCGACCAAGAGAGGTATACGCTACGGTTGCCGGAGGAGCTGCGGAGGTATATTCTGATGAATCATGCGGCCATCAGGCGATCGGAGAGCTACCATGGGGTGACGCCGATGAAAGGGATGGGTTGGAGTGACAGCGATGAAAGCAGCAGAGGGAAGGTTAACATGACGACGCCTCCATTTATTCGTCGCAAGGATTGA 1020 0.5255 MIETRRSHFSLLFLLLGLPTYYVSGRHVPHSASAPSPSSMTPEVDIATLLKATAVVCAVLFITFFSAYFNYWTAVIFARQHDLPTGGRDGLSWRCSCSRGIDRKILDTFPILVYSTIKNQKIGKGELECTVCLSEFEDHQTLRLIPKCNHVFHPECINAWLASHDTCPLCRANLNPDPGEVAIRMPTQLNADEPNEESGGRSMSSEASETQNHPAAQVPNDVGASSSNSANNMEEDCRAKPSRNRRTRWGKYKRLQKSNSTGHSLVEQPEATPSSDQERYTLRLPEELRRYILMNHAAIRRSESYHGVTPMKGMGWSDSDESSRGKVNMTTPPFIRRKD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00171 339 CDD RING-H2_EL5-like 128 171 - -
Accr1g00171 339 MobiDBLite consensus disorder prediction 191 235 - -
Accr1g00171 339 FunFam E3 ubiquitin-protein ligase ATL6 91 177 - -
Accr1g00171 339 SMART ring_2 129 170 IPR001841 -
Accr1g00171 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 228 - -
Accr1g00171 339 MobiDBLite consensus disorder prediction 186 278 - -
Accr1g00171 339 Pfam Ring finger domain 128 171 IPR001841 -
Accr1g00171 339 MobiDBLite consensus disorder prediction 254 278 - -
Accr1g00171 339 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Accr1g00171 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 179 IPR013083 -
Accr1g00171 339 MobiDBLite consensus disorder prediction 315 339 - -
Accr1g00171 339 SUPERFAMILY RING/U-box 118 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00171 Accr-Chr1 3390656 3391946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00171 11 295 Rapid Response to Elicitors AT3G05200 35.473 2.08e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00171 K10664 - cit:102623318 192.2