Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00147 ATGCGGTCTATCTTTTGTGGAAACTTTGAATATGATGCTCGGCAGTCTGATCTGGAGCGGCTGTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGGCCGGGTTTGCCTTCATCTACATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGTGCACTTGATCGGGTAGAATTTGGTCGAACGGGACGCAGACTTCGTGTGGAATGGACAAAAAATGAACGTGGAGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCAGCAAATTCAAGGCCATCAAAAACTTTATTTGTTATTAATTTTGATACAAATCATACCCGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATTATTAATGTGAGGATTAAAAGGAATTTTGCATTTGTCCAGTATGACTCTTATGATGATGCCATCAAAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTCATCACAGTTGAATTTGCTGCGGAGAATGATGATGACAGGAGGAATGTACACAGTCCTGATAGAAGCCATGATCGTTCACGTGATATAAGCTATGATAGAAGGCGATCACCCAGTCCTTATCGCCGAGAAAGAGGCAGCCCTGATTATGGCCGTGGCTCTAGTCCATATAGGAGAGAGAGGAGCAGCCCAGACTATGGTCATGACCGTAGACAGAGTTCCCAACAGATTGAGCGAGGTAGCCCTGATTATAATCGCAGGAGCTGTAGTCCATATAGAAGAGAGAGGGGTGGTTCTGACCCCGTTCGTGGCTTTAGCCATAGTCCTGATCATAAAGAACAAGCTAGAACTGACCCTGGCAATTCTCACTCCCATAGTCCCAATGGAGGAGAGAGGGTAAGCCCTCAAAATGGTGGTTCCGACAACAGCCCTTCCTATAGGAAGAGGGTTAGCCCTGAAAATGGTCATGGCTCTACAAGTAGTCCTGACGCTAGAGGTGATTCTAGTCCTTCCAATGGTGATGAGGATCGTGTAATTTCCGTGCCTGAGCCAAAGGACAACGCTGACCATGCTGATGCTCCTGAAAGTCCCATGAATGAAACAGACCGCAGCCAATCTCCTGCTGCTGAAGAATGA 1110 0.4622 MRSIFCGNFEYDARQSDLERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAAIRALDRVEFGRTGRRLRVEWTKNERGGIRRPGSSRRSSANSRPSKTLFVINFDTNHTRTRDLERHFEPYGKIINVRIKRNFAFVQYDSYDDAIKALEATNMSKLLDRVITVEFAAENDDDRRNVHSPDRSHDRSRDISYDRRRSPSPYRRERGSPDYGRGSSPYRRERSSPDYGHDRRQSSQQIERGSPDYNRRSCSPYRRERGGSDPVRGFSHSPDHKEQARTDPGNSHSHSPNGGERVSPQNGGSDNSPSYRKRVSPENGHGSTSSPDARGDSSPSNGDEDRVISVPEPKDNADHADAPESPMNETDRSQSPAAEE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00147 369 MobiDBLite consensus disorder prediction 278 326 - -
Accr1g00147 369 MobiDBLite consensus disorder prediction 246 277 - -
Accr1g00147 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Accr1g00147 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Accr1g00147 369 Gene3D - 1 81 IPR012677 -
Accr1g00147 369 Gene3D - 83 180 IPR012677 -
Accr1g00147 369 SMART rrm1_1 97 163 IPR000504 GO:0003723
Accr1g00147 369 SMART rrm1_1 3 70 IPR000504 GO:0003723
Accr1g00147 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Accr1g00147 369 MobiDBLite consensus disorder prediction 336 355 - -
Accr1g00147 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Accr1g00147 369 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 315 - -
Accr1g00147 369 CDD RRM1_AtRSp31_like 2 73 - -
Accr1g00147 369 MobiDBLite consensus disorder prediction 171 369 - -
Accr1g00147 369 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Accr1g00147 369 FunFam Serine/arginine-rich splicing factor RS31 1 86 - -
Accr1g00147 369 MobiDBLite consensus disorder prediction 171 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00147 Accr-Chr1 2934063 2937123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00147 3 162 Eukaryotic Initiation Factors Gene Family AT4G34110 24.294 1.06e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00147 K12893 - gmx:100796509 472.626