Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00115 ATGAGCAGAGGAAAGAAGCATATTACACTGCCTTCTTCAGAGAATAATGATGATGAAAAGAAGATCATTCGTAGGGAAACTGAAAGGAAAAGAAGGCAACAAATGACCACCCTTTGTGAATCACTCCGATCTTTGCTTCCTTTTGAGCTCATCAAGGGAAAGCGTTCAGTTTCTGACCACATAGGGGAGGCTGCAAGTTATATAAAAGATTTGGAGGAGAAAAACCAAGAACTCCAAATTATGAGAGATAAGCTCAAACAAGAGGCTAATCAAAGTTTGTTTGGTGAAAGTTCAAGCCATTCAGATATGGTCAAGTGTGTATGCATTTCTCCTTTTCCGGGTGGCATTATTGAAATTTCTATAGATAGTGGCCTTGAGGAAAGCAGTTTTCCACTATCACTCTTGCTGGAAATATTGATGCAAGAAGGATGTAATGTTGTGAGTTGTGTGTCCACCCAAGTGAATGGAAGGCTATACCACTCTATTAAGGCTGAGGTGAATAACTTGGAAAGTCTTGATATAGCTGGGTTGGAACAGAAACTGAATGGCGCAATCTTCTGGTCGATCCAGGATTTGCTTTGA 582 0.4038 MSRGKKHITLPSSENNDDEKKIIRRETERKRRQQMTTLCESLRSLLPFELIKGKRSVSDHIGEAASYIKDLEEKNQELQIMRDKLKQEANQSLFGESSSHSDMVKCVCISPFPGGIIEISIDSGLEESSFPLSLLLEILMQEGCNVVSCVSTQVNGRLYHSIKAEVNNLESLDIAGLEQKLNGAIFWSIQDLL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00115 193 Coils Coil 64 91 - -
Accr1g00115 193 MobiDBLite consensus disorder prediction 1 22 - -
Accr1g00115 193 SMART finulus 25 77 IPR011598 GO:0046983
Accr1g00115 193 Pfam Helix-loop-helix DNA-binding domain 24 72 IPR011598 GO:0046983
Accr1g00115 193 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 181 - -
Accr1g00115 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 19 71 IPR011598 GO:0046983
Accr1g00115 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 94 IPR036638 GO:0046983
Accr1g00115 193 Gene3D - 11 95 IPR036638 GO:0046983
Accr1g00115 193 CDD bHLH_AtORG2_like 20 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00115 Accr-Chr1 2386731 2387593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00115 13 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 39.888 6.16e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr1g00115 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00115 - - ccaj:109790384 174.481