Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00080 ATGTCAGATTCCGACGACGAAAATCCCGAAGTTACTCCCCAATCAAAGCCCACCGCCGGCGAACCTGGCTCTGTAATGGATTTCGACCTCGACCTAGAGAGTTCCTGGCCTTTAGATCAGATAGCTTTCACCTCTAACCCTATGTCCCCTTTTCTGATTTCCGCCACATCGGACCAACCTTCTTCTCCTCTCTGGGTTTTCTCAGACGTTGACGATGATAAGCAAGCTAAGCTTGCCGCTTCGGCTCTCACCGATGTCCATCGATTGCCCTCCTGCAATTCGAATTCAGTAGCTGAAAAACCTGTGGAGAATGAAGAGACTAAAAAAACCCCTTCGCCCTTTGTTTCCCTGCCACCAGTACCATTAGAAACTCCAGAATGGTATTGTTTGATTAAAGAAAGGATGACACAAGCACTAAGGTACTTCAAAGAATTGGCTGGCCAGAATGTTCTAGCTCAGGTTTGGGCTCCTGTGAGGATGGGGAACCAGTATGTCCTTACAACTTCAGGGCAACCCTTTGTTCTTGATCCACACAGTAATGGACTCTATCAGTATAGAACAGTCTCACTGATGTACATGTTTTCAGCGAGTGGGGGAAATGATGGAATCCTGGGGCTTCCCGGTCGTGTCTTCCATCAGAAGTTGCCAGAATGGTCTCCCAATGTTCAATATTATTCTAGTAAAGAGTATCCTCGCCGGAATCATGCTCAACATTACAATGTTCGTGGAACTGTGGCTCTGCCTGTGTTTGAACCTTCAGGTCAGTCATGTATTGGTGTGCTGGAGTTGATAATGACTTCTCAGAAGGTTAACTATGCCCCTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAAGAGTTCAGAAATTTTGGATCATCCATTCACTCAGATTTGTAATGAAAGCCGTCAGAATGCATTAGCAGAGATCTTGGAGATATTGACTGTGGCCTGTGAAACTCATAAATTACCTTTGGCCCAAACATGGGTTCCCTGTAGGCATCGAAGCGTTCTGGCCAATGGTGGTGGCCTGAAGAAGAGCTGCTCCAGCTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACTACTGATGTTGCATTCTATGTCATAGATGCTCATATGTGGGGTTTCCATGAAGCCTGTGCTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGAGCGTACTTGTCAGGCAACATGTGCTTCTGTGGGAACATTACCCAGTTCTGCAAAACTGAGTACCCTTTGGTACATTATGCTCTCATGTTTGATGTAACCAGTTCTTTTGCTGTCTGTTTGCAAAGCTCTCATACAGGACGTGATGATTATATATTGGAGTTTTTTCTTCCTCCAAAGATCACAGACTTGAATGAACAAAAGACTATGTTGGGATCTATAGTAGCAACAATTAAACAGCATTTCCATAGTCTTAAGATAGCTGCTGGTCTTGAACTTGAGGAGAAATGTTCAGTGGAAATCATTGAAGCGACGAGTGAAAGAGTTTATTCAAGATTCGAATCTATTATGATTACCCAACCTACTGAATTGCCACATGGACCTGACGCCTTGCCAAACATGGGGGAGATTTTACCACTGGATACATCAGAGCAGCAGATGGCTTTCTTAGATGATATGAATGGTGGGGGGAGTCTTGCTGATATAACAGGTGGAACATCTGAGCAGATATCCCCCTTGGAGACTAAAAGCATAAAGAAACCCTCAGAGAGAAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTTTGCAAAGCTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGTCTCGGTGTTTGCCCCACTACAATGAAGCGCATTTGTAGGCAGCACGGGATATCCCGTTGGCCATCGCGGAAAATTAACAAGGTTAATCGTTCCTTGTCCAAGCTCAAGCGGGTCATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTAAATTCTCTCCCTACCGGTCCGCTTCCCATGGCTGTTGGTTCCTTTCCTGAGCCTTCAAACAAGTCCTGCCAGCAAGCCTCACTAAGCACTCAACTGGCAGAACCGCAGATGAAAGAGCGTGAGTTGGATGCCTTCAAAGTATCGGAAACAAACAGGCAAACTGAGATTGAACATCAGTTGGCAGGAGGAAGGGTACAAAGTCCTGAGACACACGAGAAAAGTGGGTCCAGTCAGGAGATTAGTAAAGGCCCTAGAGGACCTAGAACAGGGAGTGCCTCAAGCGAAGATGGGGCAAACCCTGCTTCTCATGGTTCGTGTCATGGTAGTCCCCCAATGGAAAGTTCACCTCCAAAAGATATATTTGTTACACCCAAATCACCGGAGTTGCTGCCAACAAGTAAATTGAATAGTCCGCCTGGGTATGCCGTGCCCAACCTCATGCCCACAGAACTTCAGGAGTCATTTGGAGGAATGCTGATAGAAGATGCAGGTAGTTCCAAAGACTTGAGAAATTTGTGTCCTGCAGCTGCAGACGCCAATGTGGAGGATCAGTTACCAGAAGCTTGTGCTGCTAGTCCGCCATTCTCTGACTTGGTTCCTAAGCAATGCACTAATGCTCTTAGCGACACGGTGAAGCCTTTTGCAGCTCGGAGAGAAATGAAGACTGTGACTATAAAAGCAACGTACAGAGAAGACATCATACGGTTTCGTATCCCCTTAACGTCAGGCATCGTGGAGCTGAAAGAAGAAGTTGCCAAGAGACTGAAACTAGAGGTGGGTACCTTTGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATTGTCTGTGATGCCGACCTTCAGGAGTGCATTGATATCTCTAGATCATCCGGTACTAACTTAATCAGGCTTTTGGTACATGATATATCATCCAATCTCGGAAGTTCATGTGAAAGCTCAGGGGAGTGA 2937 0.4556 MSDSDDENPEVTPQSKPTAGEPGSVMDFDLDLESSWPLDQIAFTSNPMSPFLISATSDQPSSPLWVFSDVDDDKQAKLAASALTDVHRLPSCNSNSVAEKPVENEETKKTPSPFVSLPPVPLETPEWYCLIKERMTQALRYFKELAGQNVLAQVWAPVRMGNQYVLTTSGQPFVLDPHSNGLYQYRTVSLMYMFSASGGNDGILGLPGRVFHQKLPEWSPNVQYYSSKEYPRRNHAQHYNVRGTVALPVFEPSGQSCIGVLELIMTSQKVNYAPEVDKVCKALEAVNLKSSEILDHPFTQICNESRQNALAEILEILTVACETHKLPLAQTWVPCRHRSVLANGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVIDAHMWGFHEACAEHHLQQGQGVAGRAYLSGNMCFCGNITQFCKTEYPLVHYALMFDVTSSFAVCLQSSHTGRDDYILEFFLPPKITDLNEQKTMLGSIVATIKQHFHSLKIAAGLELEEKCSVEIIEATSERVYSRFESIMITQPTELPHGPDALPNMGEILPLDTSEQQMAFLDDMNGGGSLADITGGTSEQISPLETKSIKKPSERKRGKTEKSISLEVLQSYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLPTGPLPMAVGSFPEPSNKSCQQASLSTQLAEPQMKERELDAFKVSETNRQTEIEHQLAGGRVQSPETHEKSGSSQEISKGPRGPRTGSASSEDGANPASHGSCHGSPPMESSPPKDIFVTPKSPELLPTSKLNSPPGYAVPNLMPTELQESFGGMLIEDAGSSKDLRNLCPAAADANVEDQLPEACAASPPFSDLVPKQCTNALSDTVKPFAARREMKTVTIKATYREDIIRFRIPLTSGIVELKEEVAKRLKLEVGTFDIKYLDDDQEWVLIVCDADLQECIDISRSSGTNLIRLLVHDISSNLGSSCESSGE 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00080 978 MobiDBLite consensus disorder prediction 678 695 - -
Accr1g00080 978 SMART PB1_new 883 965 IPR000270 GO:0005515
Accr1g00080 978 Pfam PB1 domain 883 964 IPR000270 GO:0005515
Accr1g00080 978 MobiDBLite consensus disorder prediction 716 798 - -
Accr1g00080 978 CDD PB1_NLP 884 964 IPR034891 -
Accr1g00080 978 MobiDBLite consensus disorder prediction 671 698 - -
Accr1g00080 978 ProSiteProfiles PB1 domain profile. 883 965 IPR000270 GO:0005515
Accr1g00080 978 Pfam RWP-RK domain 590 638 IPR003035 -
Accr1g00080 978 MobiDBLite consensus disorder prediction 730 761 - -
Accr1g00080 978 MobiDBLite consensus disorder prediction 92 116 - -
Accr1g00080 978 PANTHER PROTEIN NLP8 58 977 IPR045012 GO:0003700
Accr1g00080 978 MobiDBLite consensus disorder prediction 1 31 - -
Accr1g00080 978 FunFam RWP-RK domain-containing protein 880 964 - -
Accr1g00080 978 Gene3D - 880 964 - -
Accr1g00080 978 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Accr1g00080 978 SUPERFAMILY CAD & PB1 domains 880 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00080 Accr-Chr1 1640520 1644949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00080 265 978 NLP Transcription Factor Family AT4G24020 53.288 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Accr1g00080 PB1 2.9e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00080 - - gmx:100786118 1369.37