Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00047 ATGGGTTCTCATGGTTATGTGGATGATAAAAGTGAAAGTAGGTTGTATATTGGGAACCTTGATCTTAGAATAACAGAAGCAGCTCTTATAAAAATGTTTTCTCCTTATGGGAAGATTGTATCAGAGGATTTCTTGTTGCACACTCGTGGCCCCAAGCGTGGAGAGCCACGTGGTTTTGCTTTCATCCAGTATAGCTCAAAAGAGGAAGCAGAATTGGCCAAGGAGAAAATGCACGGCAAGTTAGCTTGTGGCCGGCCATTGGTTGTTCGGCTTGCTAGTGAGAAGTGCCTGTTAGAAACAGCCAATAACTCATCGAAAGTCACCGGAGAAGGGCACAAGATACACCTTGCTGGTAATGGCATGGGACAGACAAGTCGTAGTGCAAAAATAGCTGCAATAAAGAACAAATTGAAATCAATAGAAGAGGAGAGCTCTAGGCCAAAGAGACAGAAGCAAACGGATGTTGTATCTTGA 474 0.4346 MGSHGYVDDKSESRLYIGNLDLRITEAALIKMFSPYGKIVSEDFLLHTRGPKRGEPRGFAFIQYSSKEEAELAKEKMHGKLACGRPLVVRLASEKCLLETANNSSKVTGEGHKIHLAGNGMGQTSRSAKIAAIKNKLKSIEEESSRPKRQKQTDVVS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00047 157 CDD RRM_RBM18 14 93 IPR039157 -
Accr1g00047 157 Gene3D - 10 103 IPR012677 -
Accr1g00047 157 MobiDBLite consensus disorder prediction 138 157 - -
Accr1g00047 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 49 151 - -
Accr1g00047 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Accr1g00047 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Accr1g00047 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Accr1g00047 157 SUPERFAMILY RNA-binding domain, RBD 6 99 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00047 Accr-Chr1 1346509 1347745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00047 13 95 Eukaryotic Initiation Factors Gene Family AT1G71770 40.964 5.23e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00047 K24527 - gmx:100806572 249.98