Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00029 ATGTCTTCCGCTATATCATCAATTACAAAAGCAAATCTCAAAAAACCGACCTCCTTCTTCGGCATTCAATTATGGATTCTGCTTCTAGCTTTAATTGCAGCGATCATCGTGCTCATGATTTTCATCGCTATCTGCATTTCCTTCATCTGCTTTCGTCGTCGTCGACGTCGTCACAGAAAGCCGTACGATTCTCGATTTTCTTTGCCCAAACCAATTGCATCCAAGCATTATCTTCATCACAATTCCAGTTCGTTGTCCCTCGACAAGAGGCTACACTCAGGCAATCTTGATGTCTCTGGAATTCTGATGAACTTGGACAGGTTCTTACACAATAATGTCAATGGCGGTAGGGAAGATGGAGATTTAGAATTGATTGTTGGATGCTCACATAGGAGTAAGAGTGTCTCGGGACAGAGTATCAAATTCGGCTTGCAGGTGATCATGGAGGCGACGAATCAATTGGCTAAAGAAAATGTGATTGGAAGTGGCGATCATGGAATTGTTTATCTAGGTTTGTTGGGGGATAATACTCGAGTGGCAGTGAAGATGCTCGTAAGCTACAGTTGTCAAACTGAGGATTTTGCACTGCAAATGGAGGCAATTGGATGCGCAAGACACAAGAAACTGGTCCAATTGCTTGGATATTGTACTGAGGGAGCTTACAGGATATCAGTATCTGAATACATAAATAATGGAAATCTGTATCAATGGCTTCACCAATTTCCAGGACAAGTCAGCCCTCTAACATGGGATACCAGATTGAGTGTTATCCAGGGTGTGGCAAAAGGATTGGCCTACCTTCATGAGGACGTTGAACCCAAGATTCTCCATGGAAACTTAAAATCTAGTAATATTTTGCTTGATCACCAATGGAATCCCAAAATCTCTGATTTTGGCCTCACTAACCTTTCCACTGCTAAGTGTACTCCTAATTTGAAAACACCGAGTTGTATGGATCCAAAAAGTCTTTCCACTAGTGATTTCAACGAGAGCAATGACATTTATAGTTTCGGAGTTCTTATAATGGAGATTGTATCAGGAAGGACTCCTTTAGATCATAGTCTACCCCAGGGAGATTTAGTTGTCTGGTTTAAGTCAGAGATTGGAAATGAAAATATTGACCACTTAGTGGACTCAAAATTGCCTGAAATGCCTCCTTCCAAGGAACTCAAACAGATTATTTTGGTTTCACTTCGATGTGTTGATCCTGACGTGAATCCAAAACTCAAAATGGGAAATGTGATTCGCATGCTTGAGCCTCGCGACCTGCTTCTTTCTAATGAACATGACATTGCTAGGGAAGTACATGAATTCAATCACTCGCCACAAAGTGACCCTGCATCAGAACTAGGTGGCAGTCCATAA 1365 0.4168 MSSAISSITKANLKKPTSFFGIQLWILLLALIAAIIVLMIFIAICISFICFRRRRRRHRKPYDSRFSLPKPIASKHYLHHNSSSLSLDKRLHSGNLDVSGILMNLDRFLHNNVNGGREDGDLELIVGCSHRSKSVSGQSIKFGLQVIMEATNQLAKENVIGSGDHGIVYLGLLGDNTRVAVKMLVSYSCQTEDFALQMEAIGCARHKKLVQLLGYCTEGAYRISVSEYINNGNLYQWLHQFPGQVSPLTWDTRLSVIQGVAKGLAYLHEDVEPKILHGNLKSSNILLDHQWNPKISDFGLTNLSTAKCTPNLKTPSCMDPKSLSTSDFNESNDIYSFGVLIMEIVSGRTPLDHSLPQGDLVVWFKSEIGNENIDHLVDSKLPEMPPSKELKQIILVSLRCVDPDVNPKLKMGNVIRMLEPRDLLLSNEHDIAREVHEFNHSPQSDPASELGGSP 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00029 454 FunFam Putative receptor-like serine/threonine-protein kinase 229 433 - -
Accr1g00029 454 ProSiteProfiles Protein kinase domain profile. 154 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00029 454 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Accr1g00029 454 Gene3D Phosphorylase Kinase; domain 1 126 228 - -
Accr1g00029 454 Pfam Protein tyrosine and serine/threonine kinase 156 414 IPR001245 GO:0004672|GO:0006468
Accr1g00029 454 Gene3D Transferase(Phosphotransferase) domain 1 229 437 - -
Accr1g00029 454 SUPERFAMILY Protein kinase-like (PK-like) 136 419 IPR011009 -
Accr1g00029 454 PANTHER OS01G0323000 PROTEIN 7 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00029 Accr-Chr1 1150126 1152583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00029 34 419 Trihelix Transcription Factor Family AT5G38560 31.436 2.66e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Accr1g00029 PK_Tyr_Ser-Thr 5.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00029 - - pcin:129293787 613.224