Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr19g00148 ATGGCTGGACCCTCGACGGACGAAATTATCCTTTCAGGCGAGCGAAGTGAATCTTCATTCTCGTCATTCTCTTTGTCTGATATAACTCAGGCTTTTCCTTTCTCTTCTGGAAACCCTAGAATCGAGGAGACTAGAGGCGTCATGCATCTCTATCGTGAGGATCCCACTTCCTCATCGCCTTCTGATCTTCCTGTTTTAAGGAAACCACTTGTCTGTGTGCTTGGAGTGCCAAATCACATGACATATGCAGATTTTTGCCAGTTCTGTGGCTCATTTATTCTGCATATCTTAGAGATGCGGATTGTCAGAAATGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAGATTCTACAGATGGTTTCTACAAGCATTATAATGGGCGTCGTTTCTCATCCATGGAGGTGGAAGTTTGCCGTGTTATGTTCGCATTGGATGTGCAGTACACTGGCCTGATTGAACACGCACAGGCATCTAATGCTAGCTCGACTGAACAGCCTGCATGTCCAGTGTGCTTGGAGCGATTGGATCAAGATACAAGTGGAATTCTTACAACCATTTGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGGTATTGTCAGCAGCAGGCTGAAAAATCTACATGTTTTGTTTGTCAAACCACAGAAAACCTCAGCATATGTGTTATTTGTGGGTTTGTTGGCTGTGGAAAATACAAAGCAGGACATGCCAAAGTACACTGGAAAGAGACACAGCATTGCTACTTCCAAGAAGTGGAAACACAGCGAGTATGGGATTATGTGAAAGATAACTATGTTCATAGACTAATCCTGTCCAAAACTGATGGGAAGTTAGTTGAGTTAAACTCTCACTGTGAGCATACAGGAAATGAATGTGGAAGTTGCAGCTGTGAGGATAATGCTATGAGTGAGGCTATACTTAACAGCAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACACAACTTGAAAACCAAAAATTATACTTTGAGTTGTTACTTCAAGAAGTAAAAGAAGAAACTGAGAGAGAAATTTCTAAAGCTGTTGAGAAGGCCATTGCTGTTAAACTGCAGAAGCTGCAGTCCAAGCTCGACAGATGTCATAAGGAGAAGAAATTATTGGATGATCTAAATGAGAATCTACTGAAAAATCATGAGATCTGGAAAGCCAAGATGCTTGAAATTGAAGAAAGGGAGAAAAAGGCCATAAAACTCAAGGATGATAAAATAAGGGCCCTGGAAGAGCAGTTACGAGTTCTCATGATTCGTCTTGAAGGTGGGGGAGACAACTGA 1347 0.4143 MAGPSTDEIILSGERSESSFSSFSLSDITQAFPFSSGNPRIEETRGVMHLYREDPTSSSPSDLPVLRKPLVCVLGVPNHMTYADFCQFCGSFILHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNGRRFSSMEVEVCRVMFALDVQYTGLIEHAQASNASSTEQPACPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSTCFVCQTTENLSICVICGFVGCGKYKAGHAKVHWKETQHCYFQEVETQRVWDYVKDNYVHRLILSKTDGKLVELNSHCEHTGNECGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFELLLQEVKEETEREISKAVEKAIAVKLQKLQSKLDRCHKEKKLLDDLNENLLKNHEIWKAKMLEIEEREKKAIKLKDDKIRALEEQLRVLMIRLEGGGDN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr19g00148 448 ProSiteProfiles Zinc finger RING-type profile. 173 213 IPR001841 -
Accr19g00148 448 SUPERFAMILY RING/U-box 165 214 - -
Accr19g00148 448 SMART ring_2 173 212 IPR001841 -
Accr19g00148 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 284 IPR013083 -
Accr19g00148 448 Pfam Ring finger domain 172 213 IPR001841 -
Accr19g00148 448 CDD RRM_BRAP2_like 71 152 - -
Accr19g00148 448 CDD RING-H2_BRAP2 171 214 IPR047243 -
Accr19g00148 448 SUPERFAMILY RING/U-box 189 288 - -
Accr19g00148 448 Coils Coil 356 441 - -
Accr19g00148 448 PANTHER BRCA1-ASSOCIATED PROTEIN 14 444 - -
Accr19g00148 448 SMART Zf_UBP_1 223 272 IPR001607 GO:0008270
Accr19g00148 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 209 IPR013083 -
Accr19g00148 448 Pfam BRCA1-associated protein 2 64 160 IPR011422 -
Accr19g00148 448 ProSiteProfiles Zinc finger UBP-type profile. 207 300 IPR001607 GO:0008270
Accr19g00148 448 Pfam Zn-finger in ubiquitin-hydrolases and other protein 224 283 IPR001607 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr19g00148 169 213 C3H Transcription Factor Family AT1G72220 48.936 2.68e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr19g00148 K10632 - jre:109008623 705.671