Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr19g00072 ATGAGTAACGCCTCTTCTTCCGCGTTTCAATTTGATGGTGATGAGAAGTCCCCTGCCTCACTTGACTTTGAATGTGAATACTCATGGTTCAAGAATCGGGCAAATCCTTCGACACTCCCAAATTCGAGGGCACAGGTACCGAACGATGCGAGGACTCGAAATTTCAAGACTCAACTCTGCAGAAGGTTTAGACAGGGAATTTGTACTCAAGGGTCCGATTGTTGCTTTGCTCATTACGTTGGAGAGCTTCGGAGGCAAGAATTTGGTTATGACAATAGGTCATTTCAGGAACCTAAAATATGCAGAATGTTCTATCAAGGGCAACAATGCTCTTATGGAAACACCTGTCGTTTCCTTCATACGAGGCCTGCCACTGTGAATTCTAGAGACACTGCAACAGAAGTAATTACTATCGGACATGGTAAAAGAAAATATGATCAATTGGAACTCAAGAGTGGGTTTGATGAGAGTTCTATTGCTGAAGTGAATCCAAAGAGAGAGATGTTGAAGACAAAGAGGTGCATCAAGTGGGACATGAAAGGGCATTGCCCGTACGGAGATATGTGTCGCTTTTCTCATGGGGAAGCAGAATCAGTGAAGCTTGATGGCTACCCAACTGCTGAGTGTAGGGTAGAGCGAACTTCTGCTACAGCGACAAATGTGTCAACTGGCACTTTTCTTAAGAAATTGAAAGAATCATTTGCATGGAATTACAAATTCAGCAGAAATGAACTACACAGGATCAGTCGCATCTATGCTGATTGGATTGAAAAATAA 777 0.4286 MSNASSSAFQFDGDEKSPASLDFECEYSWFKNRANPSTLPNSRAQVPNDARTRNFKTQLCRRFRQGICTQGSDCCFAHYVGELRRQEFGYDNRSFQEPKICRMFYQGQQCSYGNTCRFLHTRPATVNSRDTATEVITIGHGKRKYDQLELKSGFDESSIAEVNPKREMLKTKRCIKWDMKGHCPYGDMCRFSHGEAESVKLDGYPTAECRVERTSATATNVSTGTFLKKLKESFAWNYKFSRNELHRISRIYADWIEK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr19g00072 258 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 170 195 IPR000571 GO:0046872
Accr19g00072 258 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 78 IPR000571 GO:0046872
Accr19g00072 258 Gene3D - 163 200 - -
Accr19g00072 258 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Accr19g00072 258 SUPERFAMILY CCCH zinc finger 167 197 IPR036855 GO:0046872
Accr19g00072 258 Pfam CCCH-type zinc finger 99 120 IPR041367 -
Accr19g00072 258 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
Accr19g00072 258 SUPERFAMILY CCCH zinc finger 94 123 IPR036855 GO:0046872
Accr19g00072 258 PANTHER CCCH ZINC FINGER/TIS11-RELATED 42 124 IPR045877 GO:0003729
Accr19g00072 258 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Accr19g00072 258 SMART c3hfinal6 97 122 IPR000571 GO:0046872
Accr19g00072 258 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Accr19g00072 258 SMART c3hfinal6 54 80 IPR000571 GO:0046872
Accr19g00072 258 SUPERFAMILY CCCH zinc finger 53 84 IPR036855 GO:0046872
Accr19g00072 258 Gene3D - 49 133 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr19g00072 168 211 C3H Transcription Factor Family AT1G68200 44.681 6.52e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr19g00072 zf-CCCH 6.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr19g00072 - - pcin:129288651 374.785