Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr19g00036 ATGAGTAGCAATTCGTTGGTGGGCCTGCAAGACCACCTCAAATTGGCGAGGGAATACGCTCTTGAAGGCCTCTATGACACCTCCATAATCTTCTTCGACGGTGCAATTGCCCAGATCAACAAACATTTGAACTCTGTAGATGACCCTTTATTGCGTACAAAATGGATTAATGTAAAGAAAGCTCTTTCTGAGGAAACAGAAGTAGTGAAGCAACTAGAGGCAGAGAGAAAGGCATTCAAAGAAGCCCCTAGTGGTAGTGGAAGACGTCCTTCTTCGCCTCCCATATCAGTTAAATCATCATCATCATCTTCATTTTTGTTTCAACCATTAGATGAGTATCCTACTTCTTCATCAAGTGCATCTATGGATGACCCTGATGTATGGAGGCCACCTAATAGAGATGCCCCAAGTAGAAGACCCGCAAGGTCTGCTCAAATGGCCACTAGGAAGTCATCACAAGATGGGGCTTGGGCTCGAGGTGCTACTTCAAGAACAGGCACAACTAGCCGTGGTGCCAAAGCTGGTGCTACAAGTAAAGTTAATTCAGGAGCCAGGGCATCGGCTTCTGGGAAGAAAGGTGCTGGTTCTACTTCTGGAAAGTCGAGCAAGGGAGATTCAGTTAATGGTGATGCTGAAGATGTTAAGTCAAAGAAAGGACAATATGAGGGTCCTGATCCTGACTTGGCTGCAATGCTTGAAAGGGATGTTTTAGAAAGCACTCCTGGAGTGAGATGGGATGACGTTGCAGGGCTGACTGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGGATTAGAAGGCCATGGAAAGGTGTTCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTGTTAGCCAAAGCAGTTGCTACTGAATGTGGCACCACATTCTTCAATGTTTCTTCTGCCACTTTAGCTTCGAAGTGGCGTGGAGAGAGTGAGCGTATGGTGCGATGTTTGTTTGATCTTGCAAGAGCATATGCTCCAAGCACAATTTTCATTGATGAGATTGATTCTTTGTGTAATGCTAGGGGGGCATCTGGTGAACATGAATCATCGAGAAGGGTGAAATCTGAACTCCTAGTTCAGGTTGATGGTGTAAGCAATAGTTCAACGAATGAAGATGGTAGCAGGAAAATAGTAATGGTTTTGGCAGCCACCAACTTCCCTTGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAACGTATTTACATTCCCCTTCCTAATTTTGAGAGCCGTAAAGAGCTGATCCGGATTAATTTGAAGACTGTAGAGGTGGCTATTGATGTGAATATAGATGAGGTGGCTCGGCGGACGGAGGGCTACAGTGGGGATGATCTGACAAATGTCTGCCGTGACGCTTCCTTGAATGGCATGAGGCGCAAGATAGCGGGAAAGACTCGGGATGAGATAAAGAACATGCCCAAGGATGAGATTTCAAAGGACCCTGTTGCCATGTGTGATTTCGAAGAAGCTTTGGCAAAGATCCAACGAAGTGTTTCACAGGCTGACATTGAGCGCCATGAGAAATGGTTTGCTGAGTTTGGATCAGCATAA 1593 0.4583 MSSNSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNSVDDPLLRTKWINVKKALSEETEVVKQLEAERKAFKEAPSGSGRRPSSPPISVKSSSSSSFLFQPLDEYPTSSSSASMDDPDVWRPPNRDAPSRRPARSAQMATRKSSQDGAWARGATSRTGTTSRGAKAGATSKVNSGARASASGKKGAGSTSGKSSKGDSVNGDAEDVKSKKGQYEGPDPDLAAMLERDVLESTPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAIDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALAKIQRSVSQADIERHEKWFAEFGSA 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr19g00036 530 Gene3D - 3 80 - -
Accr19g00036 530 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Accr19g00036 530 Pfam AAA+ lid domain 441 482 IPR041569 -
Accr19g00036 530 Gene3D - 420 506 - -
Accr19g00036 530 FunFam Katanin p60 ATPase-containing subunit A1 420 506 - -
Accr19g00036 530 SMART AAA_5 278 421 IPR003593 GO:0016887
Accr19g00036 530 ProSitePatterns AAA-protein family signature. 391 410 IPR003960 GO:0005524|GO:0016887
Accr19g00036 530 Pfam ATPase family associated with various cellular activities (AAA) 282 419 IPR003959 GO:0005524|GO:0016887
Accr19g00036 530 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 530 IPR028596 GO:0008017|GO:0008568|GO:0051013
Accr19g00036 530 CDD Kp60-NTD 9 75 - -
Accr19g00036 530 MobiDBLite consensus disorder prediction 79 226 - -
Accr19g00036 530 PANTHER AAA DOMAIN-CONTAINING 25 529 - -
Accr19g00036 530 MobiDBLite consensus disorder prediction 206 226 - -
Accr19g00036 530 Gene3D - 240 521 IPR027417 -
Accr19g00036 530 MobiDBLite consensus disorder prediction 89 123 - -
Accr19g00036 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 527 IPR027417 -
Accr19g00036 530 FunFam Katanin p60 ATPase-containing subunit A1 240 408 - -
Accr19g00036 530 Coils Coil 62 82 - -
Accr19g00036 530 MobiDBLite consensus disorder prediction 144 205 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr19g00036 234 522 Calmodulin-binding Proteins AT3G56690 40.339 6.37e-51 186