Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr19g00032 ATGGACGTTACCTCTCTCGGACCAAATAGTAACACCCAGACCGATCAATACCCTTTGCTGATGGAGCAGCCAGAAACCCATAATGGTCATCAGCATGTAATTGACATTACAAGAAGTAGTAACGACTTATCTGGCTCTACTCAAGATGACCAACATCATGAAATGCATTTGCCTCATTTGGAAGATCAACCATCAGCTGGCACGCAAGTTCCCACACATCAATCATCTTCATCTTCATCATCCAGGTTAAACTCTACAAATTCATCATCAACAAGAAGAGGTGAGGGATATGGTCATCACAGAAGAAGCCCACTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTTGTCACTGTGGGTCAGATCATAGCATCTGTTGTTGTCTTGTCAATTTCCAGGAATGAAAATCCCAAAGCTCCTCTTTTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCTACTCTTCCCATTCTTTACTGTCGTTATCAAAATCGTTATCAAAGCTCTGGACAAAATTTATCTCAACCATCTCAAGGATCTTCTGGAAGCAATCCTTCAGAACGGACTTCTTATACTGCAATCTCTGTTGCTCATGTTTCAGATGAAGAGGGCAGTCGTACTACAGAATCAACTACAGTAAACACTGGGATTCCTGGAGCCTTTAGTTCTAGGTTTAATGGTTTAGTAGACCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAACGTTTGGATCTTTGGAGGTCACACTACTCCATCTGATGCTCCAAAATTATATAGATTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGATATGCTATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGAATTCGAGAGGACTTTTCTCAAACTAGAGGAGCCACAGTTGAATCTATCAATGCCCTGCCTATATATAAGTTCAGTTTGAAGAAAAACGAAAATAGTGATGATCAGGATGGCAATACAGGCAATACAGATATAGATGAAGGAGGGACCTTGGCTGCTGGGACAGAAAACGAGCGATCCATATCGGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGCTACCTTGCTCCCATGTCTTCCATGTTGAGTGTGTGGACAAATGGCTAAAGATAAATGCATCTTGTCCTCTCTGTAAAAGCGAGGTTGGTACAAGTGTACTTTCGGCAGAGGAGTCTGGTCAGCATTAG 1281 0.4161 MDVTSLGPNSNTQTDQYPLLMEQPETHNGHQHVIDITRSSNDLSGSTQDDQHHEMHLPHLEDQPSAGTQVPTHQSSSSSSSRLNSTNSSSTRRGEGYGHHRRSPLNSGLWISVELVVTVGQIIASVVVLSISRNENPKAPLFAWIVGYASGCVATLPILYCRYQNRYQSSGQNLSQPSQGSSGSNPSERTSYTAISVAHVSDEEGSRTTESTTVNTGIPGAFSSRFNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTTPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFSLKKNENSDDQDGNTGNTDIDEGGTLAAGTENERSISGEDAVCCICLAKYADDDELRELPCSHVFHVECVDKWLKINASCPLCKSEVGTSVLSAEESGQH 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr19g00032 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 416 IPR013083 -
Accr19g00032 426 MobiDBLite consensus disorder prediction 61 103 - -
Accr19g00032 426 MobiDBLite consensus disorder prediction 170 189 - -
Accr19g00032 426 Pfam Ring finger domain 369 410 IPR001841 -
Accr19g00032 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 413 - -
Accr19g00032 426 SMART ring_2 369 409 IPR001841 -
Accr19g00032 426 SUPERFAMILY RING/U-box 363 415 - -
Accr19g00032 426 MobiDBLite consensus disorder prediction 332 358 - -
Accr19g00032 426 FunFam E3 ubiquitin-protein ligase 352 418 - -
Accr19g00032 426 MobiDBLite consensus disorder prediction 65 93 - -
Accr19g00032 426 ProSiteProfiles Zinc finger RING-type profile. 369 410 IPR001841 -
Accr19g00032 426 SMART ringv_2 368 410 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr19g00032 1 416 C3H Transcription Factor Family AT1G80400 56.235 1.42e-164 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr19g00032 - - gmx:100819729 654.44