Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00175 ATGGCAGATCTTGCTAGCTACGGGAATGCCGACTGTGACATAGAGCAGGCATTAATTCCTTTGAAAAAGGGTGCCCAACTGCTTAAATATGGTCAGAAGGGGAAGCCCAAGTTTTATCCATTCAGGCTTTCCAATGATGAATCATCTTTAATCTGGATTTCAAACAGTGGAGAAAGAAGACTGAATCTTTCTTCTGTCTTGAGAATTATTCCTGGACAAAGAATAGCTGTTTGTCAAAAGTATCTGAGTCCTGAGAAGGACTATCTGTCCTTTTCCCTTATTTATAACAATGGAAAGCAGTCTCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAACTCTGGATTACTGGCCTCAAAGCTCTGATATCTTCTGGCCAAGGTGGGCGGTCAAAAATTGACGGGTGGAGTGATGGGGGTCTTTATCTTGATGATAACAGGGACTTGACATCAAGGAGTCCAAGAGAAAGTTCAGTTATTACACTAGATATTAAATCTCCTGATACTTCTGTGAATTTTAATCCTAATATTGCTTCAAAGTCCTTTCAACCGGTGAAGTCTGTGAATTATTCACCATTTGACCCTTCAAATATGCAAGCAAAAGGACCTGGTTCTGAAGCTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACATCGAGTCATGGATCTGTGCCAGATGACTGTGATGCTCTGGGTGATGTGTACATATGGGGGGAGGTTATCACTGAGAATGTTATGGGAGTTGGTGTAGATAAAATTTTCAATCACTTCAGTCCAAGGGCAGATGTGCTTTTGCCCAGACCACTGGAGTCCAATGTAGTTTTGGATGTACATCATATAGCATGTGGTGTTAGGCATGCTGCACTAGTCACGAGGCAAGGTGTGGTATTTACTTGGGGAGAAGAATCTGGAGGACGTCTAGGCCATGGTGTTGAGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCTTTGGCTTCTACTACTGTTGATTTTGTTGCTTGTGGGGAGTTTCATACCTGTGCTGTTACCATGTCTGGCGAACTATATACTTGGGGTGATGGAACTCATAATGCCGGACTTCTTGGTCATGGCACTCATGTAAGTCATTGGGTACCCAAACGAATTTCAGGTCTACTAGACGGGCTTCAAGTTGCTTTTGTCACTTGTGGTCCATGGCACACAGCCTTGATATCTTCAACTGGGCAACTCTTCACATTTGGTGATGGAACATTTGGGGTCCTGGGTCATGGAGATAGGGAGAATGTTTCATATCCTAGAGAAGTAAAATCATTGTCAGGGTTAAGAACAATAACTGTTGCATGTGGAGTGTGGCATACTGCAGCCGTGGTTGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCTGGTAAATTGTTTGCTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGACTTGAACCAACTTGTGTGTCTATGCTCATTGATTACAATTTTTATAAGATTGCTTGTGGTCACAGTTTGACAGTTGGCCTCACAACATCAGGACGTGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGCAATCCACAGTCTGACGGAAAGCTGCCCTGCCTGGTCGAAGACAAGCTTTCTGAAGAATCTGTTGAAGAAATTGCATGCGGTGCATATCATGTTGCAGTTTTAACATCCAAAAATGAAGTTTATACGTGGGGAAAGGGTGCTAATGGAAGGCTGGGTCATGGGGACATTGAAGATCGAAAAGCCCCAACTCTGGTTGAAGCTTTAAAAGATAGACATGTTAAAAATATTGCGTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTATCAGGTGCCGAGCAGCCTCAGTGCTCTACTTGTAGACAGCCATTTGGTTTTACTAGAAAGAGGCACAACTGTTATAATTGTGGGCTTGTGCATTGCCACTCATGCAGTTCAAGGAAGGCATTTAGAGCGGCTCTGGCTCCTGATCCTGGAAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGGTGGCAGAAGCTGGCATTAATAATAGAAGGAATGCCATGCCTCGTTTGTCTGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGATAAGGCTGGCCAAGTCACCTGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCTAGACAAGGCAAGAAGACTGATACATTCTCTCTGGTTCCTAGCTCACAAACCCCTTTGCTGCAGCTGAAAGATGTTGTCTTCTCTACTGCTGTTGATCTGAGATCTACAGCTCCAAGACCAGTTCTGACATCATCTGCAGTAAGCTCCAGGTCTGTGTCCCCTTTTTCTAGAAGACCAAGTCCACCTCGTTCAGCTACGCCTGTTCCAACAACGTCAGGACTTTCTTTCTCAAAAAGTACAAATGATAGTCTGAAGAAAACCAACGAACTTCTAAATCACGAAATGCTGAAGTTACGCTCTCAGGTTGAGAGCCTGAGGAAAAGGTGTGATCTGCAAGAATTAGAGCTTCAAAGGGCAGAAAAGAGAACTCAGGATGCTATGGCAATGGCTGCTGAGGAATCTGCTAAATCTAAGTCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTGAAAGATCTAGCTGAGAGACTACCTGCAGGAGCTTATGTCGCTGACAGCATCCGGCCAGCTTACCCACCAAAAGGTTTGGAGCCAAATGGCATCCACTATCCTGACTCAAATGGGGAGGGACATGCCAGAGCAGAGTCAACCAGTGGATCTAGCTTGGCTTCCTCTGCTCCTGAATCTTCCCTATTCAACAGAACTGAGGTCACGGGAACTTATGCAACTAATCTTTACCAGCAAAACCGGGTGCTTGGGCCTTCCAATGGGACAAATGAGTACCCAAATGTTATACTTGCCAATGGCGGTGTGTTTCAGGCAGCTAGCAGTAGTAGCGTATTAGATACCACTGATGGCAGGAATTCTGGGACTCTCCAAGATGACGAGAGTGTTTCAAGATCTAGGAATGCTGTACTGGCTGCCAATAGTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGGGTGTATATAACACTAATGGCTTTAAGTGATGGAACGAGAGATCTAAAACGAGTGCGCTTCAGTCGACGAAGATTTGGAGAGCACCAGGCAGAGACTTGGTGGTCTGAGAATCGTGAGAAGGTATATGAAAGGTATAACGTCCGTAGCAGCACTGAGAAATCTTCGAGCCAAGCAGCTCGTGGGGCAGAAGGTGTGGTTTCACCTGTTTCATAA 3342 0.4434 MADLASYGNADCDIEQALIPLKKGAQLLKYGQKGKPKFYPFRLSNDESSLIWISNSGERRLNLSSVLRIIPGQRIAVCQKYLSPEKDYLSFSLIYNNGKQSLDLICKDKVEAELWITGLKALISSGQGGRSKIDGWSDGGLYLDDNRDLTSRSPRESSVITLDIKSPDTSVNFNPNIASKSFQPVKSVNYSPFDPSNMQAKGPGSEAFRVSVSSAPSTSSHGSVPDDCDALGDVYIWGEVITENVMGVGVDKIFNHFSPRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGVVFTWGEESGGRLGHGVEKNVVQPRLVEALASTTVDFVACGEFHTCAVTMSGELYTWGDGTHNAGLLGHGTHVSHWVPKRISGLLDGLQVAFVTCGPWHTALISSTGQLFTFGDGTFGVLGHGDRENVSYPREVKSLSGLRTITVACGVWHTAAVVEVIVTQSSASVSSGKLFAWGDGDKNRLGHGDKEARLEPTCVSMLIDYNFYKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKLSEESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKNIACGSNYSAAICLHKWVSGAEQPQCSTCRQPFGFTRKRHNCYNCGLVHCHSCSSRKAFRAALAPDPGKPYRVCDSCFVKLNKVAEAGINNRRNAMPRLSGENKDRLDKSEIRLAKSPVPSNMDLIKQLDSKAARQGKKTDTFSLVPSSQTPLLQLKDVVFSTAVDLRSTAPRPVLTSSAVSSRSVSPFSRRPSPPRSATPVPTTSGLSFSKSTNDSLKKTNELLNHEMLKLRSQVESLRKRCDLQELELQRAEKRTQDAMAMAAEESAKSKSAKEVIKSLTAQLKDLAERLPAGAYVADSIRPAYPPKGLEPNGIHYPDSNGEGHARAESTSGSSLASSAPESSLFNRTEVTGTYATNLYQQNRVLGPSNGTNEYPNVILANGGVFQAASSSSVLDTTDGRNSGTLQDDESVSRSRNAVLAANSNQIEAEWIEQYEPGVYITLMALSDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTEKSSSQAARGAEGVVSPVS 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00175 1113 SUPERFAMILY RCC1/BLIP-II 231 621 IPR009091 -
Accr18g00175 1113 FunFam PH, RCC1 and FYVE domains-containing protein 1 454 625 - -
Accr18g00175 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 294 342 IPR000408 -
Accr18g00175 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 345 397 IPR000408 -
Accr18g00175 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 515 564 IPR000408 -
Accr18g00175 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 401 449 IPR000408 -
Accr18g00175 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 569 616 IPR000408 -
Accr18g00175 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 463 510 IPR000408 -
Accr18g00175 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 568 619 IPR000408 -
Accr18g00175 1113 Coils Coil 819 860 - -
Accr18g00175 1113 MobiDBLite consensus disorder prediction 805 819 - -
Accr18g00175 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 401 452 IPR000408 -
Accr18g00175 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 294 345 IPR000408 -
Accr18g00175 1113 SMART fyve_4 618 687 IPR000306 GO:0046872
Accr18g00175 1113 MobiDBLite consensus disorder prediction 912 950 - -
Accr18g00175 1113 MobiDBLite consensus disorder prediction 778 797 - -
Accr18g00175 1113 CDD FYVE_like_SF 629 682 - -
Accr18g00175 1113 MobiDBLite consensus disorder prediction 997 1016 - -
Accr18g00175 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 695 IPR013083 -
Accr18g00175 1113 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Accr18g00175 1113 Coils Coil 875 895 - -
Accr18g00175 1113 Gene3D - 209 456 IPR009091 -
Accr18g00175 1113 FunFam Putative E3 ubiquitin-protein ligase HERC1 626 694 - -
Accr18g00175 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 280 290 IPR000408 -
Accr18g00175 1113 MobiDBLite consensus disorder prediction 1091 1113 - -
Accr18g00175 1113 PRINTS Chromosome condensation regulator RCC1 signature 346 362 IPR000408 -
Accr18g00175 1113 PRINTS Chromosome condensation regulator RCC1 signature 563 584 IPR000408 -
Accr18g00175 1113 PRINTS Chromosome condensation regulator RCC1 signature 387 403 IPR000408 -
Accr18g00175 1113 PRINTS Chromosome condensation regulator RCC1 signature 505 523 IPR000408 -
Accr18g00175 1113 PRINTS Chromosome condensation regulator RCC1 signature 403 417 IPR000408 -
Accr18g00175 1113 PRINTS Chromosome condensation regulator RCC1 signature 296 312 IPR000408 -
Accr18g00175 1113 CDD PH_PLC_plant-like 13 124 - -
Accr18g00175 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 387 397 IPR000408 -
Accr18g00175 1113 Pfam Transcription factor regulating root and shoot growth via Pin3 1033 1088 IPR013591 -
Accr18g00175 1113 Pfam FYVE zinc finger 620 686 IPR000306 GO:0046872
Accr18g00175 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 464 515 IPR000408 -
Accr18g00175 1113 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 890 - -
Accr18g00175 1113 Gene3D - 457 625 IPR009091 -
Accr18g00175 1113 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Accr18g00175 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 346 400 IPR000408 -
Accr18g00175 1113 Gene3D - 12 129 IPR011993 -
Accr18g00175 1113 SUPERFAMILY FYVE/PHD zinc finger 620 690 IPR011011 -
Accr18g00175 1113 MobiDBLite consensus disorder prediction 778 819 - -
Accr18g00175 1113 MobiDBLite consensus disorder prediction 930 950 - -
Accr18g00175 1113 Pfam Transcription factor BRX N-terminal domain 870 901 IPR027988 -
Accr18g00175 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 439 449 IPR000408 -
Accr18g00175 1113 FunFam PH, RCC1 and FYVE domains-containing protein 1 203 453 - -
Accr18g00175 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 232 293 IPR000408 -
Accr18g00175 1113 SUPERFAMILY PH domain-like 12 123 - -
Accr18g00175 1113 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 624 686 IPR017455 -
Accr18g00175 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 516 567 IPR000408 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00175 1035 1103 Major Intrinsic Protein MIP AT1G31880 47.826 5.89e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00175 - - gmx:100783270 1741.09