Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00160 ATGCAACTGGCAGATCCAAGTGTGTTGGAGACCTCCTCCGGCGAGCCCATGATGGCCACAGTGACGGCGACTGTTCCACCAGCAGAAGGCACGGCTGCCGATGGTGCTGCAGAAATCGAGATGATGGATAGTATCGTTGGTATGGATGCAACAAATTCAGGTGATGATATTGATCAGAAGAGAAGTGGTGGTGGCGGTGGCGGTGGAGGAGGAGGCGGCGGCAACCGGTGGCCTCGCCAAGAAACCTTCGCTCTCTTGAAGATAAGGTCAGATATGGACGCTGCGTTTCGGGATTCCAGTCTTAAAGGTCCACTTTGGGAACAAGTTTCAAGGAAAATGTCAGAACTTGGATATAATCGAAGCGCAAAGAAATGCAAAGAGAAGTTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAAGCAGAACTGGTAAACCAGAAGGCAAAGCCTACAAATTCTTTGATCAATTACAAGCCCTTGAAAATAAATTCACTGTCTCTCACCACCATCATCACACTCCGTCAAAACCGCCGCCACCTCCGCCGCAGCCACAATCTCAACCTTCTTTCCAAACATGGCCTAGCAATATTAATAATAATGACCCTACTCCTACCACAGCTACTATCTCTTATGTCACTACTATTCCATCCAATATAAACCCTACTCTCATTTCTCCGCCGCCGGCGGTGCCACAGCCGGTGAATATTGTTGCCGCCACCATCGCCAACCCTAGGAATTTGTCGAACAAGAGTCTTTTCTCGTCAATCACGACGACCACGTCGACCTCGTCGTCGACGGCATCTGATGAGGACATGGAAGAGAAGTACAGGAAGAAGAGGAAGATGAAGGACTACTTCCGGAGGCTGACGAGGCAAGTGCTGGCGAAGCAGGAGGAGATGCAGAAGAGGTTTCTAGAAGCCATAGAGAAGAGAGAGCGCGAGAGAGAAGCACAGTTAGAAGCTTGGAGGGCTCAAGAAATGGCCAGGATCACTAGAGAGCATGACATTCTTGTCCAAGAAAGATCCACCACCGCGGCCAAGGACGCCGCCCTCATCGCCTTCCTCCAGAAATTATCCAGCGGCCAGCAAAATCCGGCACCGCCACCACCACCTCCTCCAGCTCCACCACAACAACCTGTAATGCAAGCCGTAGAACAACCTCGTGAACAACTGCAATTGCTCCCTATTGACAACAAGTTCGAAATACAGAAAGTGAACATAACCAACGGTCATCATAGTAACAATAATAATCCGGTAAGTGTTTCAAATTCTTCTTCTTCTTCTTCAAGGTGGCCAAAGCCAGAAGTTCATGCATTGATAAGGCTGAGGACAAGTATGGACCCAAAGTATCAAGAGAATGGACCAAAAGGACCATTGTGGGAGGACATATCGGCCGGAATGCAGCGGCTAGGGTACAACCGAAGCGCGAAGAGATGCAAAGAGAAATGGGAGAACATTAACAAGTACTTCAAGAAAGTGAAGGAGAGCAACAAGCAAAGGCGTGAAGATAGCAAGACTTGTCCTTATTTTCAAGAGCTTGAGGCTCTTTACAAGGAGAAGGGCAGAACCAACAACAGTAGTAGTATGAATATCATCTTCGGTGGCGCGGCCGCTGGGAGTCGCGAAATGATGATGGAGCCATTGATGGTGCAGCCGGAGCAGCAATGGAGGCCACCTCCGCCACATGTGGAGGAGGAGGGTGGTGGTGCTGGGAGGGAGAATAACAGCGCAAATGATGTTATGTTTCAGTACGAAGGGAAAGAAAGAGACGGAGAAGAAGATCTAGAGGAGATGGAAGAAGAAGAAGAAGATGATGATGATGATGTTGAGGAAGATGAAGAAGATTGTATGGAAGATGGTGATCAGCAAGAAGGACGTTATGAGGTTGCAGCGACAAGCAATAATAAAATTGCTTCAGTGGATACTGTTGAATGA 1938 0.4845 MQLADPSVLETSSGEPMMATVTATVPPAEGTAADGAAEIEMMDSIVGMDATNSGDDIDQKRSGGGGGGGGGGGGNRWPRQETFALLKIRSDMDAAFRDSSLKGPLWEQVSRKMSELGYNRSAKKCKEKFENVYKYHKRTKESRTGKPEGKAYKFFDQLQALENKFTVSHHHHHTPSKPPPPPPQPQSQPSFQTWPSNINNNDPTPTTATISYVTTIPSNINPTLISPPPAVPQPVNIVAATIANPRNLSNKSLFSSITTTTSTSSSTASDEDMEEKYRKKRKMKDYFRRLTRQVLAKQEEMQKRFLEAIEKREREREAQLEAWRAQEMARITREHDILVQERSTTAAKDAALIAFLQKLSSGQQNPAPPPPPPPAPPQQPVMQAVEQPREQLQLLPIDNKFEIQKVNITNGHHSNNNNPVSVSNSSSSSSRWPKPEVHALIRLRTSMDPKYQENGPKGPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFQELEALYKEKGRTNNSSSMNIIFGGAAAGSREMMMEPLMVQPEQQWRPPPPHVEEEGGGAGRENNSANDVMFQYEGKERDGEEDLEEMEEEEEDDDDDVEEDEEDCMEDGDQQEGRYEVAATSNNKIASVDTVE 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00160 645 PANTHER FI21293P1 53 567 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 364 381 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 361 386 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 190 209 - -
Accr18g00160 645 SMART sant 428 490 IPR001005 -
Accr18g00160 645 SMART sant 73 135 IPR001005 -
Accr18g00160 645 MobiDBLite consensus disorder prediction 409 434 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 1 29 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 591 622 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 409 433 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 628 645 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 1 19 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 167 209 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 45 78 - -
Accr18g00160 645 MobiDBLite consensus disorder prediction 553 645 - -
Accr18g00160 645 ProSiteProfiles Myb-like domain profile. 424 488 IPR001005 -
Accr18g00160 645 CDD GT1 431 495 - -
Accr18g00160 645 Pfam Myb/SANT-like DNA-binding domain 430 517 IPR044822 -
Accr18g00160 645 Pfam Myb/SANT-like DNA-binding domain 75 161 IPR044822 -
Accr18g00160 645 Gene3D - 432 493 - -
Accr18g00160 645 Gene3D - 77 138 - -
Accr18g00160 645 Coils Coil 295 326 - -
Accr18g00160 645 Coils Coil 582 616 - -
Accr18g00160 645 FunFam Trihelix transcription factor GT-2 432 493 - -
Accr18g00160 645 CDD GT1 75 140 - -
Accr18g00160 645 ProSiteProfiles Myb-like domain profile. 75 133 IPR001005 -
Accr18g00160 645 FunFam Trihelix transcription factor GT-2 77 138 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00160 71 557 Trihelix Transcription Factor Family AT1G76880 50.398 1.71e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Accr18g00160 Myb_DNA-bind_4 1.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00160 - - pcin:129293735 752.281