Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00154 ATGGGTAGAAAGAAGCCGACTGCTCGTGACGATGATAATGTGCCCACTGCATCTCAAGGTGGTGGAAAGTCGAAAAAGAAGGGGCTAGTGGTTGATGATGATGAATATGCGGAGCTGTCTGAGGAACCTTTGGCTGAAGAAGAGAAGCCTGTGGCCGCCGGAAAGAAGAAAGGTAAAAAAGGTCACTCAAAGGCTTCAAAAGTCGAGGAAGAAGATTTAGAAATGGCGATGGATAATGATGATGATGTACCTGAGGTTGTGTTTACTGGGAAGAAGAAGGGGAAATCAAAAAAGGGCGGTGGCAACAGTGTGTTTACTGCTTCGAGCTTCGGTTTGCTTGGTGATGAGGAGGGTGGAGAAGATGATGATGATGACCAACAATCCGGCTTAACTGGTGGGGTGGACAATGACGACGAGGAGGAACCGGTTGTCAGTTTTTCAGGTAAGAAGAAGTCCTCAAAGGGTTCCAAGAAGAAGGGTGGTAGCTTGTTCACTGCATCAGCTTTTGATGCCATAGACGAAGATAATGAAGGGGAGGAGGTGATCGATAATTCTATGGAAGCCAGCCGTGAAGAGAATGATGACGATGAACCAGTTATTGCTTTTACGGGTAAGAAAAAATCGTCAAAAAGTAGCAAGAAGGCTGGTGCCTTATTCACAGCATCTAGTTTTGGTGATACTGACGGAGAGCAGGATAAAGATGAACGAGAAGAGGGGGAAGAAGATGTCCCTCCGATCACTTTCTCAGGGAAGAAAAAGAAGTCATCGAAGTCTTCCAAGAAGGCTGCTAATTCATTTAGTGCAGCTTTTGCCGAAGAAGATGTGGATGAAGAGGTGATTGAAACTTCAAAAAATAGAAAGAAGAAGAATAAAAAGGGCGGAAGAACTGCTCTAGAAGAGGAAGATTTGGACAAGCTTCTTGCTGAGCTTGGGGAGGGGCCTCCGGTAAAGCCTGCTTCCCCTTCAGCAGAGGATGATAAAGTTCAGGCTCCTTCTGAAGTAGCTGCTCCTGCTCCTGCTCCTGCTGTGGTGGAAAAAGAAGGGGAAGGAGAGACAGTGGAGTCAGCTGCTGCAAAAAAGAAGAAGAAGAATAAAAAGAAAAAGGAAAAGGAGAAGAAGGCTGCTGCAGCCGCAGCTGCTGCAAGTGCCCCCGAAGAAGAAGTTAAACCTGAGGCCTTAGAATCAAAGAAGAATGATTCCAAGACTAAAGCAGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTGGCCCGAAGAAAAGAGACTGAAGAGAGGAAGAAAAGGGAAGAGGAGGAGAGGCTAAGGAAGGAAGAAGAAGAGCGCCGTAGGCAAGAGGAACTCGAGAGGCAAGCAGAAGAGGCAAGACGTAGGAAAAAGGAAAGGGAGAAGGAGAAGCTCCTGAAGAAGAAGCAAGAAGGAAAATTGTTAAGTGGTAAGCAAAAGGAAGAAGCTCGTCGTCTGGAAGCCATGAGGAAGCAGTTTCTTGCTGGTACAGGGGGTGTCACTCTTCCGGCTGGGGACTCTGGTGCACCAGCCAAACGACCCATATATCGGACAAAGAAGTCGAAACAAACACATCATCATCAGAATGGTACTGCCCCTGATAAGGCAGCTGAAGATGTGGAAGCAAAGGAAAATCTGGAGACCCCTCCTGATGCAGAGTCATTGGAACCTGAGAAGGTTGAAGTGGTTGAATCAGTGCAGGTCGAGGACAAGGATGAAGTTGAAGAAGAAGATGAGGAGGAATGGGATGCAAAGAGTTGGGATGATGTTAATTTAAATGGAAAAAGTGCTTTTGCTGATGAGGAGGCTGACTCTGAACCAGAAACCGTAGTGAAGAAGGAGATAAAAAATGCTGCACCACCAGCTGTTGTCAAGTCAACAGGCACAGCTAAGAAAGCTGCTCCTCAGCCTCCAACTGAGCAAACTGGAAGTAAAAAGCAGGTTGAGAAGCAACGCCTAAATCAGGATCCACAAAATGCAACAGGGCCTTCTCAGCCAAGTGGAGAGAACCTTCGGTCCCCAATTTGCTGTATTATGGGCCATGTGGACACAGGTAAAACCAAGCTCCTTGATTGTATTCGAGGTACAAATGTTCAGGAAGGTGAGGCTGGTGGCATCACGCAACAGATTGGTGCTACGTACTTCCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTAAAAGCTGATGCAAAGCTGAAAGTTCCTGGTCTACTTGTGATAGACACTCCGGGCCATGAGTCTTTTACGAACTTAAGGTCTAGGGGTTCTGGTCTCTGTGATATCGCAATTCTGGTTGTTGATATCATGCATGGATTAGAACCCCAAACAATAGAATCTGTCAACTTATTGAAAATGAGGAACACGGAATTCATAGTGGCATTGAACAAAGTTGACAGACTTTATGGTTGGAAAGTTTGCCGTAATTCTCCAATTGTTAAGGCATTGAAGCAGCAAACCAAGGATGTGCAAAATGAGTTCAATATGAGACTTACTCAGGTTATCACTCAATTCAAGGAACAGGGGTTAAACACTGAGTTGTACTATAAAAATAAAGAAATGGGAGAAACCTTCAGTATTGTACCTACTAGTGCTATAAGTGGTGAAGGTATTCCGGACATGTTATTGTTGTTGGTTCAGTGGACACAAAAAACAATGGCTCAGAAACTTACATATAGTGATGAAGTGCAGTGTACAGTTTTGGAGGTGAAGGTTGTTGAAGGTCATGGGACAACTATTGATGTTGTCTTGGTTAATGGCGTTCTTCATGAAGGAGATCAAATAGTTGTATGTGGAATGCAGGGGCCTATTGTTACTACAATTCGAGCTCTGTTGACACCTCATCCTATGAAGGAGCTCCGTGTTAAGGGCACATATCTCCATCATAAAGAAATTAAGGCTGCTATGGGTATCAAAATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGCACTTCTTTACACGTGGTGGAGCCTGACGATGATTTAGAAAGTGTTAAGGAAGTAGCTATGCAAGATATGAAGCAAGTCATGAGCAGGATTGACAAAAGTGGTGAGGGAGTTTGTGTGCAGGCATCGACCCTTGGTTCTTTGGAAGCATTGCTGGAGTTTTTGAAAACACCAGAAGTGAATATTCCTGTTAGTGGTATAAGCATAGGTCCTGTACATAGAAAAGATGTAATGAAGGCCAGTGTAATGCTTGAAAAGAAAAGAGAGTTTGCCACTATCTTGGCATTTGATGTCAAAGTCAATCAGGAGGCTAAAGATCTTGCGGAAGAACTAGGTGTGAGAATTTTTATGGCTGATATCATTTATCATCTATTTGACCAATTCAAGGCCTATATTGACACCGTTAAGGAGGAAAAGAAGAGAGAAACAGCTGATGAGGCAGTCTTCCCATGTGTGATGAAAATCTTACCTGGTTGCGTTTTCATGAAGAAAGATCCGATTGTTTTGGGAGTTGATATTCTTGAAGGTGTTTTAAAGGTTGGGACTCCAATTTGTATTCCTTCCAGAGATTACATGGACATTGGTCGCATTGCGTCCATTGAAAATAACCGTAAACCTGTTGAGGATGCCAAGAAAGGGCAAAATGTGGCCATTAAGATTGTTGGCACCAATTCGGAGGAACAACAAAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCGTATCACAAGGAGATCTATCGATGTTCTCAAAGCTAATTATCGGGATGAGCTGACTATGGATGAATGGAGGCTGGTTGCGAAGTTGAAAACCGTTTTCAAGATACAATGA 3807 0.4418 MGRKKPTARDDDNVPTASQGGGKSKKKGLVVDDDEYAELSEEPLAEEEKPVAAGKKKGKKGHSKASKVEEEDLEMAMDNDDDVPEVVFTGKKKGKSKKGGGNSVFTASSFGLLGDEEGGEDDDDDQQSGLTGGVDNDDEEEPVVSFSGKKKSSKGSKKKGGSLFTASAFDAIDEDNEGEEVIDNSMEASREENDDDEPVIAFTGKKKSSKSSKKAGALFTASSFGDTDGEQDKDEREEGEEDVPPITFSGKKKKSSKSSKKAANSFSAAFAEEDVDEEVIETSKNRKKKNKKGGRTALEEEDLDKLLAELGEGPPVKPASPSAEDDKVQAPSEVAAPAPAPAVVEKEGEGETVESAAAKKKKKNKKKKEKEKKAAAAAAAASAPEEEVKPEALESKKNDSKTKAADKKVPKHVREMQEALARRKETEERKKREEEERLRKEEEERRRQEELERQAEEARRRKKEREKEKLLKKKQEGKLLSGKQKEEARRLEAMRKQFLAGTGGVTLPAGDSGAPAKRPIYRTKKSKQTHHHQNGTAPDKAAEDVEAKENLETPPDAESLEPEKVEVVESVQVEDKDEVEEEDEEEWDAKSWDDVNLNGKSAFADEEADSEPETVVKKEIKNAAPPAVVKSTGTAKKAAPQPPTEQTGSKKQVEKQRLNQDPQNATGPSQPSGENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESVNLLKMRNTEFIVALNKVDRLYGWKVCRNSPIVKALKQQTKDVQNEFNMRLTQVITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMAQKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTSLHVVEPDDDLESVKEVAMQDMKQVMSRIDKSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHRKDVMKASVMLEKKREFATILAFDVKVNQEAKDLAEELGVRIFMADIIYHLFDQFKAYIDTVKEEKKRETADEAVFPCVMKILPGCVFMKKDPIVLGVDILEGVLKVGTPICIPSRDYMDIGRIASIENNRKPVEDAKKGQNVAIKIVGTNSEEQQKMFGRHFEIDDELVSRITRRSIDVLKANYRDELTMDEWRLVAKLKTVFKIQ 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00154 1268 NCBIfam small GTP-binding protein domain 681 805 IPR005225 GO:0005525
Accr18g00154 1268 SUPERFAMILY Translation proteins 1135 1267 IPR009000 -
Accr18g00154 1268 CDD IF2_aeIF5B_IV 1139 1234 - -
Accr18g00154 1268 PRINTS GTP-binding elongation factor signature 796 805 IPR000795 GO:0003924|GO:0005525
Accr18g00154 1268 PRINTS GTP-binding elongation factor signature 744 754 IPR000795 GO:0003924|GO:0005525
Accr18g00154 1268 PRINTS GTP-binding elongation factor signature 760 771 IPR000795 GO:0003924|GO:0005525
Accr18g00154 1268 PRINTS GTP-binding elongation factor signature 680 693 IPR000795 GO:0003924|GO:0005525
Accr18g00154 1268 Coils Coil 353 380 - -
Accr18g00154 1268 MobiDBLite consensus disorder prediction 387 494 - -
Accr18g00154 1268 Pfam Elongation factor Tu domain 2 915 992 IPR004161 GO:0005525
Accr18g00154 1268 FunFam Eukaryotic translation initiation factor 5B 1131 1268 - -
Accr18g00154 1268 MobiDBLite consensus disorder prediction 293 308 - -
Accr18g00154 1268 Gene3D Translation factors 899 1019 - -
Accr18g00154 1268 FunFam eukaryotic translation initiation factor 5B 899 1018 - -
Accr18g00154 1268 CDD aeIF5B_II 900 1009 - -
Accr18g00154 1268 MobiDBLite consensus disorder prediction 604 618 - -
Accr18g00154 1268 Pfam Elongation factor Tu GTP binding domain 680 888 IPR000795 GO:0003924|GO:0005525
Accr18g00154 1268 Gene3D - 671 898 IPR027417 -
Accr18g00154 1268 CDD IF2_eIF5B 679 889 - -
Accr18g00154 1268 MobiDBLite consensus disorder prediction 573 590 - -
Accr18g00154 1268 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1001 1130 IPR036925 -
Accr18g00154 1268 Gene3D Translation factors 1131 1268 - -
Accr18g00154 1268 MobiDBLite consensus disorder prediction 658 676 - -
Accr18g00154 1268 FunFam Eukaryotic translation initiation factor 5B 1018 1124 - -
Accr18g00154 1268 FunFam Eukaryotic translation initiation factor 5B 670 898 - -
Accr18g00154 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 967 IPR027417 -
Accr18g00154 1268 Coils Coil 413 475 - -
Accr18g00154 1268 MobiDBLite consensus disorder prediction 1 676 - -
Accr18g00154 1268 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 292 1264 IPR015760 -
Accr18g00154 1268 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 676 894 IPR000795 GO:0003924|GO:0005525
Accr18g00154 1268 Pfam Elongation factor Tu domain 4 1138 1230 IPR029459 -
Accr18g00154 1268 Gene3D - 1020 1123 IPR036925 -
Accr18g00154 1268 Pfam Translation-initiation factor 2 1004 1117 IPR023115 -
Accr18g00154 1268 MobiDBLite consensus disorder prediction 532 572 - -
Accr18g00154 1268 MobiDBLite consensus disorder prediction 115 141 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00154 1 1268 Eukaryotic Initiation Factors Gene Family AT1G76810 59.654 0.0 1178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00154 K03243 - gmx:100814640 1381.31