Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00147 ATGTCCTTCCGCAGTATCGTTCGTGATGTAAGGGATGGTTTTGGAAGCTTATCAAGGCGGAGTTTTGATTTAAGGCTTCAAGGCCATCACAGGGGAAAGTCACATAGTTCAGTCCATGAGGTGCCAGCACAACCTCCGGTGATACAGAACAGCCGGTGGGCTAGCCTTCCACCTGAGCTCCTTCATGATGTTATCAAAAGATTGGAAGAAAGCGAGAGCACATGGCCTGCCCGTAAGCATGTGGTCGCATGCGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAATCCAGAGTTCTGTGGGAAAATTACTTTTCCTGTTTCCTTGAAGCAGCCTGGGCCTCGGGATGGAATGATGCAGTGTTTCATCAAGAGAGACAAATCTAACCTGACATACCACCTCTTTCTTTGCTTAAGTCCTGCCTTGCTTGTTGAGAATGGGAAGTTTCTTCTCTCTGCCAAACGGACTAGACGAACCACTTGCACTGAGTATATCATATCCATGGATGCTGAAACCATATCAAGATCTAGCAGCGCTTATATTGGGAAACTGAGGTCAAATTTTCTGGGCACCAAGTTCCTAATATATGATACTCAGCCTCCCCATAATTATGCTCAGTTGCCTCCTCCTCAACCTAGTCAAAGCCGTCGATTCTACTCTAAAAAGGTGTCGCCTAAAGTCCCTAGTGGCAGCTACAATATCGCTCAGGTCACCTACGAGTTGAACGTGCTTGGTACAAGAGGCCCGCGGAAGATGAACTGCACCATGTGCTCAATCCCAGAATCAGCCTTGGAGCCTGGTGGCACTGTCCCGGGCCATCCAGAGCTCCTCCCCCGTGCCCTGGAGGACTCATTCCGGAGCACATCCTTTTCGAAATCAATCCACAGTTCGTCCCATTTTAGCAGCTCTAGGTTCTCAGACATCATGTGGACTGGCAACGAAGAAGAGAGTGGTGGCGAGGTAAAAGAGAGGCCGCTGATTCTCAAGAACAAGTCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTCCGGGGCAGAGTGACAGTGGCCTCAGTCAAGAATTTCCAGCTGATCGCAGCAGTGCAGCCTCAGGCTGCAGCTGGTGCTCCAACAACTCCGGCACATCCTGCCTTGGCAGATCACGACAAGATTATCCTTCAGTTTGGCAAGGTGGGCAAGGATATGTTCACCATGGACTATCGATATCCTCTGTCGGCATTCCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACTAAACTAGCATGTGAATAG 1299 0.495 MSFRSIVRDVRDGFGSLSRRSFDLRLQGHHRGKSHSSVHEVPAQPPVIQNSRWASLPPELLHDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVSNPEFCGKITFPVSLKQPGPRDGMMQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDAETISRSSSAYIGKLRSNFLGTKFLIYDTQPPHNYAQLPPPQPSQSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMNCTMCSIPESALEPGGTVPGHPELLPRALEDSFRSTSFSKSIHSSSHFSSSRFSDIMWTGNEEESGGEVKERPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAVQPQAAAGAPTTPAHPALADHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00147 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Accr18g00147 432 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Accr18g00147 432 Gene3D Tubby Protein; Chain A 112 426 IPR025659 -
Accr18g00147 432 Pfam F-box domain 53 101 IPR001810 GO:0005515
Accr18g00147 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Accr18g00147 432 Gene3D - 48 102 - -
Accr18g00147 432 FunFam Tubby-like F-box protein 110 432 - -
Accr18g00147 432 ProSitePatterns Tub family signature 1. 351 364 IPR018066 -
Accr18g00147 432 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Accr18g00147 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Accr18g00147 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Accr18g00147 432 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Accr18g00147 432 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Accr18g00147 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Accr18g00147 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Accr18g00147 432 PANTHER TUBBY-RELATED 45 430 - -
Accr18g00147 432 FunFam Tubby-like F-box protein 48 101 - -
Accr18g00147 432 CDD F-box_AtTLP-like 53 97 - -
Accr18g00147 432 Pfam Tub family 114 427 IPR000007 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00147 1 432 TUB Transcription Factor Family AT1G76900 68.132 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr18g00147 Tub 1.3e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr18g00147 K19600 - rcu:8283226 682.945