Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr18g00124 ATGGGTTGCGTTCAGGCTAAGCCATCGGGGCGTTCATCGGAAGCTAAGGGCTTAGAGAGGCTGAAATTAGAAAATGGGTATGTTGGAAATGAGGGTTTCACTGCTCATCGACGATCGATGGGCCAGAGATATGGAGAAATCGAAGAGACTGCTGGGGTAAACCAGCGCGAAATCAGAAAGCATCGGCTTGGGTCTGGTATTGGGAACGAAGAAAGCAGAAATCGCTGGGCTACAGAGGGGAAGAGCAATGCTGTGCATGATGGTGAGAAATTGGCAAGGAAATCTTTTGACGATGAGATGGTTGATGGATGGCCCAGATGGTTAGTTGACAATGTTCCTGGAGAAGCTTTGGCTGGCTTGGTTCCCCGGAGTGCTGATTCATACATGATGATTGACAAGGTAGGACAAGGAACCTACAGCAACGTTTATAAAGCACGTGATAGGGCCACCAGAGAACTTGTGGCCCTTAAGAAGGTTCGCTGTGATAAATCCCAGCCTGAGAGCATTAAATTTATGGCAAGAGAAATTATGATTTTACAGAGACTGGATCATCCTAATGTTATAAAACTTAAAGGACTGGCTACATCAAGAATGCAACATAGTATTTATCTTGTTTTTGATTTCATGCAATCAGACTTGGCTAGAATAACATCTCGTCCCGAAGAAAAACTCACTGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGATAGGGGCATTTTGCACCGAGATATTAAAGGTTCAAACCTCTTGATTGATAAAAATGGAATGCTTAAGATTGCTGATTTTGGGCTTGCCAATTTTTATAATCCGAACCATAACCAGTATCTCACGAACCGGGTCGTGACACTATGGTATAGAGCTCCTGAGCTTTTGTTAGGTGCGACGAATTATGGAGTTGGTATTGATTTATGGAGTGTTGGATGCCTCTTGGCAGAAATGTTTAAAGGAATTCCAATCATGCCCGGAAGAACAGAGGTTGAGCAACTTCATATAATTTTCAGGCTATGTGGCACGCCATCAGAGGAGTATTGGAGAAAATTGAATCTTTCGACAACATTTAGACCTCCAAAGTCTTACAGACCCAGCCTAGCAGAATCTTTTAGGGATCTCCCTCCATCTTCTGTGGGTCTTTTGTGTACTCTGCTCACATTGGATCCTGCATACCGGGGCACTGCATCTAAAGCCCTTCAAAATCAGTTTTTCTTTACAATCCCCTTGGCATGTGAACTCTCTGGCCTGCCTGTAATCTACAAGGAAGATGATGGGAAAAATCTTACCAATGAACAGATCAAGCATTTGAACTCTAAATTAAGACGATCTCATTCCCGTCATGAGAGTCGAAGGAAGAATCTGGTGTCTGGCTGGCAAACAGAGCATACTGTAACTTCTGAAGAGGAATTGAGCAATAAAGTTGAGGCATTTGTTCCTTACAATGAAGAACAGGGCAGCATCCCCAGAAGCAGTATGACAGCTTCTGTTTCTAACACTTCTTAG 1521 0.4352 MGCVQAKPSGRSSEAKGLERLKLENGYVGNEGFTAHRRSMGQRYGEIEETAGVNQREIRKHRLGSGIGNEESRNRWATEGKSNAVHDGEKLARKSFDDEMVDGWPRWLVDNVPGEALAGLVPRSADSYMMIDKVGQGTYSNVYKARDRATRELVALKKVRCDKSQPESIKFMAREIMILQRLDHPNVIKLKGLATSRMQHSIYLVFDFMQSDLARITSRPEEKLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLKIADFGLANFYNPNHNQYLTNRVVTLWYRAPELLLGATNYGVGIDLWSVGCLLAEMFKGIPIMPGRTEVEQLHIIFRLCGTPSEEYWRKLNLSTTFRPPKSYRPSLAESFRDLPPSSVGLLCTLLTLDPAYRGTASKALQNQFFFTIPLACELSGLPVIYKEDDGKNLTNEQIKHLNSKLRRSHSRHESRRKNLVSGWQTEHTVTSEEELSNKVEAFVPYNEEQGSIPRSSMTASVSNTS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr18g00124 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Accr18g00124 506 SMART serkin_6 128 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr18g00124 506 Gene3D Phosphorylase Kinase; domain 1 117 210 - -
Accr18g00124 506 CDD STKc_CDK9_like 128 410 - -
Accr18g00124 506 Pfam Protein kinase domain 129 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr18g00124 506 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Accr18g00124 506 Gene3D Transferase(Phosphotransferase) domain 1 211 446 - -
Accr18g00124 506 MobiDBLite consensus disorder prediction 443 466 - -
Accr18g00124 506 PANTHER CELL DIVISION PROTEIN KINASE 126 412 - -
Accr18g00124 506 FunFam probable serine/threonine-protein kinase At1g54610 115 210 - -
Accr18g00124 506 MobiDBLite consensus disorder prediction 490 506 - -
Accr18g00124 506 SUPERFAMILY Protein kinase-like (PK-like) 122 415 IPR011009 -
Accr18g00124 506 MobiDBLite consensus disorder prediction 487 506 - -
Accr18g00124 506 ProSiteProfiles Protein kinase domain profile. 128 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr18g00124 506 FunFam Putative serine/threonine-protein kinase 211 448 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr18g00124 123 424 Core Cell Cycle Gene Families AT5G10270 47.188 4.17e-95 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Accr18g00124 Pkinase 2.4e-67 CL0016